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capsid_protein

Euk-Vir

Human_associated_gemyvongvirus_1

capsid_protein__YP_009181995__Human_associated_gemyvongvirus_1__1985415

Identity

Accession:
YP_009181995 ↗
Protein ID:
capsid_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-283
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bcuA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.78 57.0 6.21e-01 100.0% 88.8%
4indA02 2.60.120.1310 Mainly Beta › Sandwich › Jelly Rolls › 0.73 37.0 5.23e-01 99.1% 99.1%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.72 34.0 4.69e-01 98.7% 88.5%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 49.0 5.64e-01 100.0% 94.5%
3zxaC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 48.0 5.21e-01 100.0% 80.4%
1stmA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.71 42.0 5.20e-01 100.0% 92.2%
1fmd200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.71 48.0 4.90e-01 100.0% 70.2%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.70 37.0 4.93e-01 99.1% 92.7%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 50.0 4.85e-01 100.0% 65.6%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.70 34.0 4.77e-01 97.8% 93.7%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.70 48.0 5.40e-01 100.0% 88.8%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.69 48.0 4.42e-01 100.0% 55.2%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 48.0 4.99e-01 100.0% 76.9%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.68 50.0 4.81e-01 100.0% 65.4%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.68 39.0 4.93e-01 99.6% 94.7%
2qqkA02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.68 33.0 4.53e-01 98.7% 90.4%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.68 41.0 5.13e-01 100.0% 97.1%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.67 46.0 4.91e-01 100.0% 78.2%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.66 47.0 5.39e-01 100.0% 96.5%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 50.0 5.01e-01 100.0% 77.0%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 39.0 4.80e-01 100.0% 93.5%
2okxA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 32.0 3.54e-01 100.0% 55.8%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 49.0 4.90e-01 100.0% 74.8%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.65 40.0 4.75e-01 100.0% 86.4%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.64 46.0 4.56e-01 100.0% 68.5%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 5.12e-01 100.0% 91.9%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 50.0 4.91e-01 100.0% 76.9%
4rs5A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 4.81e-01 100.0% 78.3%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.63 53.0 5.08e-01 100.0% 77.6%
6eiwA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 5.32e-01 100.0% 96.9%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 4.57e-01 100.0% 66.7%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 39.0 4.78e-01 99.6% 98.6%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 47.0 4.80e-01 100.0% 82.4%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 29.0 4.12e-01 94.7% 94.6%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 40.0 4.80e-01 100.0% 98.1%
1umhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 45.0 4.93e-01 99.6% 94.6%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 40.0 4.78e-01 99.6% 98.7%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 36.0 4.30e-01 100.0% 87.7%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.58 30.0 4.11e-01 88.9% 98.2%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 35.0 4.41e-01 98.7% 98.6%
3m1hD00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.85e-01 99.6% 99.4%
2e26A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 39.0 4.27e-01 99.1% 82.2%
4r4xA02 2.60.120.1570 Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain 0.57 45.0 4.88e-01 99.6% 97.9%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 37.0 4.23e-01 99.6% 88.9%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 29.0 3.30e-01 97.3% 63.5%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.93e-01 97.3% 96.6%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 4.40e-01 98.7% 90.4%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 38.0 4.45e-01 99.6% 100.0%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.92e-01 97.3% 96.7%
8b38A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.77e-01 100.0% 91.2%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 4.67e-01 99.6% 98.0%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.53 36.0 4.14e-01 99.6% 95.1%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.31e-01 100.0% 77.4%
4cp9A00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 29.0 3.75e-01 99.6% 100.0%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 37.0 4.21e-01 98.7% 98.2%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.51 47.0 4.44e-01 100.0% 92.5%
3klkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 30.0 3.58e-01 90.3% 89.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245210 10.32.1.213 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.78 38.0 5.03e-01 93.8% 82.3%
3169527 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.75 37.0 5.28e-01 96.5% 100.0%
4212121 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.74 30.0 4.10e-01 86.7% 70.7%
4969101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 35.0 5.03e-01 100.0% 100.0%
1724852 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.71 49.0 5.63e-01 100.0% 94.0%
1236 10.2.1.42 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Potex_coat 0.71 42.0 5.20e-01 100.0% 92.2%
4934819 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 40.0 5.29e-01 98.7% 100.0%
5039150 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 36.0 5.02e-01 100.0% 100.0%
5058946 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 34.0 4.76e-01 100.0% 98.1%
3885530 10.32.1.183 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM87A-B_GOLD 0.69 47.0 5.61e-01 98.7% 100.0%
328688 10.2.1.7 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.68 48.0 4.99e-01 100.0% 76.9%
5047105 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 42.0 5.18e-01 99.1% 98.6%
5083968 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 38.0 5.04e-01 98.2% 100.0%
4023517 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 40.0 5.04e-01 100.0% 98.5%
2044957 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 51.0 4.92e-01 100.0% 71.2%
3075118 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.66 56.0 5.32e-01 100.0% 76.3%
1886797 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.66 51.0 4.88e-01 100.0% 70.8%
1498219 10.32.1.79 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › RhaB_D2 0.66 32.0 3.64e-01 100.0% 59.6%
3252755 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.65 37.0 4.76e-01 100.0% 96.2%
3708922 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 36.0 4.64e-01 99.6% 93.1%
3781147 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 41.0 4.84e-01 98.7% 89.4%
3786014 10.32.1.237 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.64 40.0 4.85e-01 98.2% 97.9%
3703651 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 35.0 4.61e-01 99.6% 96.0%
3396205 10.1.1.69 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CAND6-7_N 0.63 47.0 5.34e-01 99.1% 98.9%
4954560 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 35.0 4.58e-01 90.7% 100.0%
1316605 10.32.1.50 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF5077 0.62 35.0 4.50e-01 99.6% 93.9%
3477921 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 42.0 5.02e-01 98.7% 100.0%
5039240 10.1.2.191 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM60 0.62 36.0 4.66e-01 98.2% 100.0%
2099164 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.61 49.0 4.57e-01 100.0% 66.7%
3769357 10.1.1.69 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CAND6-7_N 0.61 46.0 5.22e-01 98.2% 100.0%
3479505 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.61 36.0 4.23e-01 100.0% 82.6%
2414126 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.61 44.0 4.37e-01 100.0% 69.3%
4028561 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 41.0 4.78e-01 99.6% 93.9%
5018134 10.1.2.186 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.60 34.0 4.35e-01 99.6% 92.6%
5056697 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 35.0 4.47e-01 100.0% 96.3%
3894462 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.60 41.0 4.82e-01 99.6% 98.1%
148379 10.2.1.69 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.60 46.0 4.18e-01 100.0% 59.9%
3824965 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.60 42.0 4.70e-01 99.1% 92.0%
3828739 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.59 40.0 4.75e-01 99.1% 98.7%
3989856 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 37.0 4.58e-01 97.3% 100.0%
3540406 10.32.1.20 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.59 44.0 4.78e-01 99.1% 90.3%
4218569 10.32.1.301 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › InhA-like_MAM 0.58 40.0 4.52e-01 98.7% 90.6%
3538224 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.58 41.0 4.72e-01 99.6% 97.0%
5043348 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 42.0 4.72e-01 99.6% 97.6%
5041016 10.1.2.181 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 0.57 41.0 4.74e-01 100.0% 100.0%
2982737 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.57 48.0 4.47e-01 100.0% 71.2%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.57 39.0 4.60e-01 99.6% 98.8%
3267687 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 30.0 4.11e-01 88.5% 98.3%
4071322 10.32.1.18 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.56 38.0 4.39e-01 98.7% 95.0%
5053827 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 28.0 3.77e-01 100.0% 95.2%
5070646 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 40.0 4.62e-01 99.1% 100.0%
3235629 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 4.47e-01 100.0% 96.6%
3653845 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 38.0 4.29e-01 99.6% 94.1%
3831061 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 40.0 4.27e-01 98.7% 86.5%
3620780 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.54 42.0 4.56e-01 100.0% 98.4%
5060060 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 24.0 3.60e-01 92.0% 98.9%
4983953 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 4.31e-01 98.7% 97.6%
3746356 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.53 34.0 3.47e-01 100.0% 62.2%
5039775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 43.0 4.61e-01 100.0% 97.9%
3617942 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 30.0 3.76e-01 89.8% 90.0%
3831284 207.1.1.465 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3, LRR_4 0.53 26.0 2.10e-01 96.5% 21.3%
5016526 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 30.0 3.14e-01 92.0% 60.0%
3520168 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 43.0 4.62e-01 100.0% 99.5%
3676352 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.52 40.0 4.41e-01 98.7% 97.8%
3928295 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 38.0 4.02e-01 98.2% 84.0%
3239398 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 39.0 4.28e-01 100.0% 95.7%
3888961 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 27.0 3.65e-01 89.8% 100.0%
3885081 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 21.0 3.03e-01 99.1% 84.2%