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capsid_protein
Euk-VirPseudogymnoascus_destructans_partitivirus-pa
capsid_protein__YP_009259751__Pseudogymnoascus_destructans_partitivirus-pa__1685502
Identity
- Accession:
- YP_009259751 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
63.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Partitiviridae›
Pseudogymnoascus_destructans_partitivirus-pa
TaxID: 1685502
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-213_326-352
Domain cluster:
representative
Pfam (2)
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.60 | 28.0 | 3.50e-01 | 74.3% | 71.3% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 28.0 | 3.75e-01 | 72.1% | 83.7% |
| 1n1fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 38.0 | 4.04e-01 | 79.3% | 79.7% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 37.0 | 3.70e-01 | 70.9% | 70.0% |
| 3uitA01 | 1.20.1440.360 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 30.0 | 3.46e-01 | 87.2% | 78.6% |
| 4od4A01 | 1.10.357.140 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase | 0.51 | 38.0 | 4.03e-01 | 88.8% | 87.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3462254 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.59 | 45.0 | 4.41e-01 | 79.9% | 93.0% |
| 3300193 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.55 | 40.0 | 3.56e-01 | 73.7% | 92.7% |
| 3291335 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 38.0 | 3.68e-01 | 72.1% | 98.5% |
| 3802701 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.52 | 40.0 | 2.85e-01 | 79.9% | 90.4% |
| 3345094 | 3615.1.1.21 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › BPS1 | 0.52 | 36.0 | 3.29e-01 | 71.5% | 90.0% |
| 3392967 | 604.1.1.253 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TRAM_LAG1_CLN8 | 0.51 | 45.0 | 3.80e-01 | 93.9% | 66.6% |
| 3699262 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.51 | 31.0 | 3.58e-01 | 86.0% | 82.9% |
| 3793322 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 38.0 | 3.51e-01 | 77.7% | 93.9% |
| 4939433 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.51 | 42.0 | 3.97e-01 | 88.8% | 77.3% |
| 3804324 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.51 | 36.0 | 3.30e-01 | 71.5% | 97.8% |
D2
high
residues 221-322
Domain cluster:
rep: viral_capsid_protein__NP_116742__Discula_destructiva_virus_1__148880__D228-324
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20895.3 best | PsV_CP | 132.2 | 3.90e-38 | 100.0% | 25.8% |
D3
medium
residues 364-434