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capsid_protein

Euk-Vir

Fusarium_poae_victorivirus_1

capsid_protein__YP_009272904__Fusarium_poae_victorivirus_1__1849535

Identity

Accession:: YP_009272904 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

70.6 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Pseudototiviridae› Victorivirus› Fusarium_poae_victorivirus_1

TaxID: 1849535

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 490-638

PDB

Domain cluster: rep: coat_protein__YP_009182166__Ustilaginoidea_virens_RNA_virus_5__1756615__D455-595_610-622

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	128.2	4.00e-37	100.0%	22.7%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5fq0A00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.64	41.0	4.73e-01	85.9%	88.2%
2ozjA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.64	38.0	4.32e-01	73.8%	78.9%
3rnsA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	35.0	4.17e-01	73.2%	86.0%
2fqpA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	36.0	4.40e-01	75.2%	96.8%
3i1aA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.58	30.0	3.48e-01	79.2%	68.9%
2j0wA03	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.56	30.0	3.80e-01	89.3%	92.6%
3d0jA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.55	38.0	4.00e-01	81.9%	76.1%
2o1qA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.55	43.0	4.64e-01	90.6%	96.9%
5xogK00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.55	35.0	3.93e-01	94.6%	84.1%
2rjzA02	3.30.70.60	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B	0.55	31.0	3.76e-01	81.2%	83.8%
2dt9A01	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.55	29.0	3.79e-01	91.3%	98.6%
6gmhK00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.53	34.0	3.80e-01	95.3%	83.5%
7o0eA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.53	29.0	3.76e-01	74.5%	96.4%
3c1mA02	3.30.2130.10	Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like	0.52	27.0	2.62e-01	83.2%	41.5%
1ztxE00	2.60.40.350	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	31.0	3.61e-01	92.6%	84.2%
2z4hA01	2.40.128.300	Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain	0.51	18.0	2.40e-01	84.6%	53.2%
4noiA01	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.51	33.0	3.85e-01	92.6%	94.2%
1jr7A00	3.60.130.10	Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like	0.51	36.0	2.93e-01	73.8%	85.0%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3972760	809.2.1.0 ↗	a+b two layers › BLIP-like › BT0923-like › BT0923-like	0.64	23.0	3.25e-01	83.9%	65.7%
3168413	2.1.1.329 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29994	0.62	23.0	2.70e-01	81.9%	45.5%
3654284	305.1.1.2 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2	0.60	30.0	4.10e-01	84.6%	98.6%
3839261	310.3.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related	0.60	31.0	3.50e-01	81.2%	63.0%
5016598	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.59	39.0	4.47e-01	89.3%	92.7%
3981553	310.3.1.3 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN	0.58	28.0	3.21e-01	73.8%	58.3%
3788422	301.7.1.0 ↗	a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like	0.58	33.0	4.17e-01	79.9%	96.5%
3973260	310.3.1.3 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN	0.57	30.0	3.27e-01	81.9%	59.2%
3946792	310.3.1.3 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN	0.57	28.0	3.17e-01	74.5%	58.3%
3276603	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	27.0	3.51e-01	89.9%	77.6%
3252217	305.1.1.2 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2	0.54	34.0	3.83e-01	94.0%	81.7%
2325417	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.52	25.0	3.01e-01	74.5%	70.1%
4665957	305.1.1.0 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase	0.51	33.0	3.78e-01	92.6%	89.5%
6675	274.1.1.10 ↗	a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS	0.51	38.0	3.77e-01	77.9%	98.7%
3193522	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.51	39.0	3.28e-01	83.2%	46.9%
3266787	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	28.0	3.58e-01	89.9%	95.3%

D2 medium residues 127-176

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	52.0	4.90e-14	100.0%	7.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4c23B02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.61	46.0	3.03e-01	86.0%	19.7%

D3 medium residues 177-275

PDB

Domain cluster: rep: coat_protein__YP_009212847__Penicillium_aurantiogriseum_totivirus_1__1755467__D82-115_136-208_280-306

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	123.4	1.20e-35	100.0%	15.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ap9B00	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.63	44.0	3.10e-01	71.7%	61.3%
3aawC01	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.54	38.0	2.93e-01	72.7%	87.2%
6jimB02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	37.0	3.44e-01	73.7%	82.0%
4a1fB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	36.0	2.62e-01	72.7%	57.0%
3fnrA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	35.0	2.57e-01	72.7%	94.4%
1o6zA01	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.51	37.0	3.19e-01	77.8%	49.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4308442	2488.1.1.5 ↗	a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SPOUT_MTase	0.54	38.0	3.50e-01	72.7%	96.9%
3665667	7531.1.1.1 ↗	a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase	0.53	39.0	2.90e-01	78.8%	94.3%
3605494	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.51	31.0	2.92e-01	72.7%	52.2%

D4 medium residues 276-297_334-346_389-422

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	33.1	2.50e-08	40.6%	3.5%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1no1A00	1.10.8.200	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Replisome organizer (g39p helicase loader/inhibitor protein)	0.62	32.0	3.30e-01	100.0%	51.5%
2z4sA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.56	30.0	3.04e-01	100.0%	47.2%
3h4cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.56	33.0	2.98e-01	98.6%	42.7%
2wauA02	1.20.58.830	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	37.0	3.07e-01	72.5%	52.5%
2e5yA02	1.20.5.440	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain	0.52	31.0	3.79e-01	97.1%	93.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3319628	65.1.1.3 ↗	beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Amidohydro_1	0.51	30.0	2.55e-01	100.0%	34.2%

D5 medium residues 298-313_347-388_423-489_654-669

PDB

Domain cluster: rep: coat_protein__YP_009072432__Botryosphaeria_dothidea_victorivirus_1__1547580__D309-450

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05518.18 best	Totivirus_coat	70.0	1.70e-19	57.5%	10.9%
PF05518.18	Totivirus_coat	38.1	7.60e-10	36.2%	6.6%