capsid_protein

Euk-Vir

Fusarium_poae_virus_1-240374

capsid_protein__YP_009272946__Fusarium_poae_virus_1-240374__1849534

Identity

49.1 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Betapartitivirus› Fusarium_poae_virus_1-240374

TaxID: 1849534

View cluster (10 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-192_299-362

PDB

Domain cluster: rep: putative_coat_protein__YP_009551640__Bipolaris_maydis_partitivirus_2__2483307__D88-220_329-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	88.7	5.20e-25	65.1%	18.9%

D2 medium residues 193-298

PDB

Domain cluster: rep: putative_capsid_protein__YP_003104769__Primula_malacoides_virus_China_Mar2007__479713__D178-292_349-369

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25666.2 best	Partiti_capsid	50.5	1.90e-13	99.1%	17.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5wvoC02	1.10.10.2230	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.55	37.0	3.97e-01	78.3%	81.8%
2x8xX02	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.54	31.0	3.56e-01	70.8%	78.9%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5044589	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	28.0	3.35e-01	73.6%	73.8%
3729645	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	34.0	3.95e-01	78.3%	93.3%
4593147	3447.1.1.3 ↗	alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › DUF1295	0.53	39.0	3.04e-01	79.2%	55.9%
3279688	4228.1.1.0 ↗	a+b complex topology › L,D-transpeptidase pre-catalytic domain-like › L,D-transpeptidase pre-catalytic domain-like › L,D-transpeptidase pre-catalytic domain-like	0.51	30.0	3.33e-01	81.1%	71.8%
3242080	2498.1.1.5 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N	0.51	39.0	2.40e-01	83.0%	36.4%
3786987	314.1.1.9 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His	0.50	39.0	2.79e-01	87.7%	74.9%