capsid_protein

Euk-Vir

Hubei_noda-like_virus_8

capsid_protein__YP_009337882__Hubei_noda-like_virus_8__1922988

Identity

65.9 mean pLDDT

Hubei_noda-like_virus_8

TaxID: 1922988

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 83-95_424-469

PDB

D2 medium residues 117-130_376-423

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1novA00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.93	87.0	5.36e-01	100.0%	89.6%
1f8vC00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.90	83.0	5.11e-01	100.0%	90.7%
2dulA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.60	43.0	2.77e-01	77.4%	80.2%
2f4mA01	3.10.620.30	Alpha Beta › Roll › C8orf32 fold ›	0.55	39.0	2.71e-01	75.8%	47.8%
1s7iA00	3.30.70.1060	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel	0.51	32.0	2.68e-01	77.4%	32.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3600630	3529.1.1.0 ↗	beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain	0.56	38.0	3.57e-01	71.0%	72.0%
3250040	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	33.0	2.61e-01	100.0%	32.0%

D3 medium residues 131-264_287-322_358-375

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ohfA02	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.86	83.0	6.91e-01	100.0%	84.8%
1ywhA01	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.59	26.0	3.89e-01	96.3%	95.1%
4qjvB00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.53	22.0	3.06e-01	98.9%	75.5%
1nijA02	3.30.1220.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain	0.53	27.0	3.44e-01	95.2%	80.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5063656	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.63	35.0	4.34e-01	100.0%	87.8%
5038684	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.59	30.0	3.74e-01	100.0%	80.0%
3243946	10.32.1.228 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan	0.56	35.0	4.09e-01	100.0%	87.4%
5024024	304.16.1.1 ↗	a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE	0.54	22.0	3.06e-01	93.1%	73.4%
4025870	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.52	21.0	3.17e-01	96.3%	89.3%
3330535	304.8.1.55 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C	0.51	21.0	3.27e-01	91.0%	93.3%
3281355	304.12.1.12 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2	0.51	28.0	3.67e-01	92.0%	97.1%
3958221	304.55.1.0 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains	0.50	27.0	2.99e-01	91.5%	62.6%

D4 medium residues 265-286_323-357

PDB