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capsid_protein

Euk-Vir

Isaria_javanica_chrysovirus_1

capsid_protein__YP_009337889__Isaria_javanica_chrysovirus_1__1930960

Identity

Accession:: YP_009337889 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

70.7 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Alphachrysovirus› Isaria_javanica_chrysovirus_1

TaxID: 1930960

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-38_76-125_504-527

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	32.6	5.20e-08	59.6%	10.9%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jwyA01	2.60.40.1620	Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like	0.55	43.0	3.83e-01	83.0%	93.3%
3h20A01	3.30.1490.240	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain	0.54	31.0	3.68e-01	74.5%	81.8%
2hzmB00	2.40.320.10	Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001	0.54	37.0	2.79e-01	70.2%	61.2%
2zaiA04	2.60.40.3030	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	37.0	3.31e-01	74.5%	86.4%
1l9mA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	36.0	3.19e-01	73.4%	85.2%
3e0jB00	3.90.1030.20	Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain	0.51	38.0	3.31e-01	78.7%	71.3%
4a18X01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.50	36.0	3.84e-01	74.5%	97.5%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1291942	4065.1.1.2 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_N	0.82	73.0	4.47e-01	94.7%	92.0%
3501851	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.57	42.0	3.88e-01	76.6%	86.7%
3280468	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.55	38.0	3.64e-01	71.3%	83.6%
3909339	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.55	36.0	3.60e-01	75.5%	64.0%
3606466	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	43.0	3.43e-01	85.1%	78.4%
3535172	11.1.1.664 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_D2	0.53	39.0	3.69e-01	76.6%	90.9%
3737581	3767.1.1.0 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain	0.53	37.0	2.97e-01	71.3%	63.4%
4013242	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	39.0	3.64e-01	76.6%	84.3%
1228433	11.1.1.17 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C	0.53	36.0	3.42e-01	71.3%	88.5%
3513270	11.1.1.239 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3	0.52	37.0	3.75e-01	74.5%	82.1%
3884299	11.1.1.239 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3	0.52	37.0	3.46e-01	75.5%	88.3%
1727258	11.14.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › OST_P2	0.52	37.0	3.20e-01	74.5%	77.9%
3879431	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	38.0	3.65e-01	76.6%	87.6%
4237265	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	38.0	3.63e-01	78.7%	86.4%
3934526	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.51	36.0	3.01e-01	74.5%	48.2%
3482313	10.1.1.10 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM	0.51	45.0	3.51e-01	100.0%	85.2%
3590783	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.51	40.0	3.53e-01	87.2%	69.7%
3903731	11.1.1.17 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C	0.51	35.0	3.28e-01	70.2%	63.5%
4311584	10.32.1.167 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Agarase_CBM	0.51	39.0	3.22e-01	81.9%	58.8%
3748702	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	42.0	2.77e-01	93.6%	75.9%
4344924	868.1.1.3 ↗	a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20	0.50	37.0	2.88e-01	78.7%	81.9%
3516030	11.1.1.16 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_N	0.50	39.0	3.35e-01	83.0%	74.0%

D2 medium residues 39-75_362-503

PDB

Domain cluster: rep: coat_protein__YP_009667014__Colletotrichum_gloeosporioides_chrysovirus_1__1766766__D76-116_373-427_432-523

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	103.0	2.10e-29	57.5%	26.8%

D3 medium residues 126-186

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	57.7	1.30e-15	100.0%	16.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tfeA02	1.10.286.20	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 ›	0.62	36.0	4.08e-01	77.0%	77.8%
2fjrA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.59	41.0	3.84e-01	72.1%	60.5%
1h1oA01	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.57	41.0	3.88e-01	77.0%	72.0%
2dt7B01	1.10.10.790	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module	0.56	38.0	3.89e-01	83.6%	72.9%
5b1aH00	1.10.10.140	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb	0.53	34.0	3.17e-01	83.6%	49.4%
1r3dA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.53	42.0	2.89e-01	95.1%	49.0%
7vtgA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.52	41.0	2.62e-01	86.9%	84.4%
8b73B01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	39.0	2.49e-01	83.6%	37.0%
4nlbA02	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.50	40.0	3.55e-01	90.2%	83.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4024517	101.1.1.64 ↗	alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2	0.64	50.0	4.25e-01	91.8%	87.8%
3991312	101.1.17.16 ↗	alpha arrays › HTH › HTH › FF domain › FF_RHG35_4th	0.63	43.0	4.45e-01	82.0%	80.0%
1501340	304.103.1.1 ↗	a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase	0.62	54.0	3.75e-01	100.0%	64.1%
5033158	7064.1.1.0 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1	0.60	47.0	3.66e-01	90.2%	74.0%
3700029	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	46.0	4.16e-01	85.2%	61.2%
4979297	7064.1.1.1 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1	0.57	43.0	3.06e-01	91.8%	26.8%
3740783	212.1.1.6 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9	0.55	44.0	3.01e-01	98.4%	24.7%
4104255	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.55	42.0	3.71e-01	90.2%	83.8%
5079848	5041.1.1.0 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C	0.50	42.0	4.27e-01	91.8%	96.7%

D4 medium residues 187-361

PDB

Domain cluster: rep: putative_coat_protein__YP_001531162__Alphachrysovirus_cerasi__284687__D184-333

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	251.8	1.20e-74	100.0%	47.8%

D5 medium residues 806-964

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22144.2 best	Fungal_virus_P2_C	91.5	6.90e-26	100.0%	33.9%