←Back to structures
capsid_protein
Euk-VirQinghai_Himalayan_marmot_astrovirus_1
capsid_protein__YP_009345899__Qinghai_Himalayan_marmot_astrovirus_1__1961665
Identity
- Accession:
- YP_009345899 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
54.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
Qinghai_Himalayan_marmot_astrovirus_1
TaxID: 1961665
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 80-270
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 205.0 | 1.70e-60 | 95.8% | 75.1% |
| PF03014.21 | SP2 | 20.2 | 5.60e-04 | 92.7% | 81.5% |
D2
high
residues 273-410
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ztnA02 | 2.40.30.190 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.78 | 67.0 | 6.66e-01 | 100.0% | 87.9% |
| 7vcrA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.57 | 33.0 | 3.70e-01 | 94.9% | 73.1% |
| 5e6tA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.57 | 38.0 | 4.43e-01 | 97.8% | 100.0% |
| 1v5vA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.53 | 30.0 | 3.60e-01 | 82.6% | 83.7% |
| 6melB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.50 | 30.0 | 3.71e-01 | 100.0% | 96.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1877513 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 69.0 | 7.25e-01 | 89.9% | 93.6% |
| 397625 | 1.1.13.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › SP2_M | 0.77 | 66.0 | 6.61e-01 | 100.0% | 88.6% |
| 2066757 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.53 | 30.0 | 3.57e-01 | 82.6% | 81.9% |
| 3449952 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 24.0 | 2.88e-01 | 72.5% | 62.2% |
D3
medium
residues 732-797