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capsid_protein
Euk-VirMamastrovirus_2
capsid_protein__YP_009380532__Mamastrovirus_2__1239566
Identity
- Accession:
- YP_009380532 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
Mamastrovirus_2
TaxID: 1239566
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 416-641
Domain cluster:
rep: capsid_protein_precursor__YP_009041464__Bovine_astrovirus__1435485__D425-658
D2
high
residues 710-773
Domain cluster:
rep: capsid_protein_precursor__YP_009010945__Bovine_astrovirus_B76_HK__1027248__D694-757
D3
medium
residues 73-263
Domain cluster:
rep: coat_protein__YP_009237527__Lake_Sarah-associated_circular_virus-14_Viruses.__X__D77-111_199-281_337-370
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 170.1 | 8.20e-50 | 93.7% | 72.3% |
| PF03014.21 | SP2 | 28.4 | 1.70e-06 | 80.6% | 73.7% |
D4
medium
residues 264-387
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442