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capsid_protein
Euk-VirHeterobasidion_partitivirus_7
capsid_protein__YP_009408641__Heterobasidion_partitivirus_7__1387301
Identity
- Accession:
- YP_009408641 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
48.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Partitiviridae›
Betapartitivirus›
Heterobasidion_partitivirus_7
TaxID: 1387301
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-339
Domain cluster:
rep: putative_capsid_protein__NP_624348__Fusarium_poae_virus_1__75747__D68-340
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25666.2 best | Partiti_capsid | 142.0 | 3.90e-41 | 98.9% | 43.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 24.0 | 3.53e-01 | 84.5% | 95.9% |
| 8sbeA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 30.0 | 3.43e-01 | 91.7% | 74.5% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 26.0 | 3.59e-01 | 92.4% | 93.0% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 26.0 | 3.55e-01 | 92.1% | 93.5% |
D2
medium
residues 373-426_440-454