←Back to structures

capsid_protein

Euk-Vir

Rodent_astrovirus

capsid_protein__YP_009448181__Rodent_astrovirus__1914442

Identity

Accession:: YP_009448181 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

51.0 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Mamastrovirus› Rodent_astrovirus

TaxID: 1914442

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 782-854

PDB

Domain cluster: rep: unnamed_protein_product__YP_004934010__Astrovirus_MLB2__683172__D676-742

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tfeA02	1.10.286.20	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 ›	0.81	45.0	5.63e-01	93.2%	91.1%
2aplA01	1.10.8.330	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like	0.67	49.0	5.15e-01	100.0%	82.4%
3vasA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.62	49.0	3.15e-01	82.2%	48.2%
1zk8B02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	38.0	3.20e-01	90.4%	36.4%
4e69A00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.59	51.0	3.25e-01	90.4%	62.3%
2afbB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.59	50.0	3.23e-01	90.4%	63.5%
7vtgA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.59	51.0	3.27e-01	90.4%	63.9%
3mbhA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.58	49.0	3.20e-01	89.0%	72.0%
4o1gA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.58	49.0	3.09e-01	100.0%	20.1%
3ibyD02	1.10.287.1770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	46.0	4.36e-01	84.9%	96.4%
4rk2A00	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.57	47.0	3.00e-01	91.8%	83.5%
4m5bA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.56	53.0	3.66e-01	100.0%	47.2%
2ddmB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.56	48.0	3.14e-01	90.4%	73.8%
3rm5B01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.56	47.0	3.08e-01	90.4%	64.7%
3a11B01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.56	50.0	4.17e-01	100.0%	81.6%
2nwhA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.55	47.0	3.00e-01	89.0%	58.0%
3lupA01	3.40.50.10170	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	46.0	3.62e-01	93.2%	95.5%
4rv5A01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.55	48.0	3.49e-01	100.0%	59.8%
4e84B00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.54	49.0	3.14e-01	97.3%	32.6%
1dgmA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.52	48.0	3.09e-01	100.0%	25.7%
1pdoA00	3.40.50.510	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component	0.51	44.0	3.65e-01	95.9%	93.0%
3c3dA02	1.10.8.240	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain	0.50	44.0	4.15e-01	97.3%	83.0%

ECOD (54)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5070938	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.80	43.0	3.51e-01	93.2%	30.0%
4411911	198.2.1.3 ↗	alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › SseC	0.80	47.0	3.72e-01	93.2%	31.9%
3227634	101.38.1.1 ↗	alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › C_tripleX	0.79	44.0	4.72e-01	91.8%	63.1%
5068222	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.79	43.0	3.42e-01	94.5%	28.9%
4940939	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.78	42.0	3.47e-01	93.2%	31.2%
5028871	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.77	42.0	3.39e-01	93.2%	28.9%
3969017	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.75	45.0	3.68e-01	93.2%	34.6%
3349480	159.1.2.0 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related	0.74	50.0	4.63e-01	100.0%	56.7%
4942810	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.72	42.0	3.34e-01	94.5%	30.0%
3957614	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.72	44.0	3.02e-01	89.0%	20.0%
3632302	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.67	49.0	4.71e-01	95.9%	68.8%
5044518	604.39.1.0 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters	0.65	48.0	3.47e-01	90.4%	31.1%
4397663	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.64	48.0	3.51e-01	100.0%	29.5%
4286470	5067.1.1.2 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF	0.62	49.0	3.48e-01	83.6%	48.8%
5056210	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.60	40.0	3.26e-01	94.5%	36.3%
1255408	2003.6.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB	0.59	51.0	3.30e-01	90.4%	65.0%
4218048	3236.1.1.1 ↗	alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger	0.58	45.0	3.11e-01	84.9%	62.3%
4890335	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.58	45.0	3.43e-01	83.6%	59.6%
3954850	268.2.1.1 ↗	a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr	0.57	54.0	3.42e-01	100.0%	31.6%
5023506	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.57	47.0	3.70e-01	90.4%	74.7%
3794529	148.1.3.193 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TRAP-gamma	0.55	45.0	3.64e-01	95.9%	66.5%
4937043	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.54	51.0	3.18e-01	100.0%	27.6%
5009371	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.54	44.0	3.71e-01	89.0%	88.0%
4968549	304.28.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain	0.54	49.0	3.00e-01	98.6%	80.2%
3277876	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.54	49.0	3.53e-01	100.0%	61.0%
4991910	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.54	49.0	3.19e-01	100.0%	79.4%
4306685	5067.1.1.2 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF	0.54	48.0	3.42e-01	100.0%	61.9%
4939929	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.54	43.0	3.54e-01	87.7%	82.2%
5013062	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.54	48.0	3.36e-01	100.0%	67.2%
4991912	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.54	48.0	3.39e-01	100.0%	61.3%
4081378	5067.1.1.2 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF	0.53	48.0	3.42e-01	100.0%	63.6%
5055219	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.53	48.0	3.04e-01	100.0%	79.7%
4974808	7516.1.1.2 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2	0.53	49.0	3.10e-01	100.0%	28.7%
5081109	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.53	48.0	3.41e-01	100.0%	67.0%
4986509	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.53	48.0	3.02e-01	100.0%	78.7%
3963026	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.53	48.0	3.25e-01	100.0%	55.4%
4935514	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.53	43.0	3.28e-01	90.4%	62.8%
5083626	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.53	47.0	2.73e-01	100.0%	41.2%
3958634	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.53	48.0	3.46e-01	100.0%	40.0%
4944364	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	48.0	3.36e-01	100.0%	74.7%
5021617	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.52	43.0	3.44e-01	90.4%	82.7%
4964693	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.52	43.0	3.49e-01	90.4%	80.7%
4938615	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.52	46.0	3.45e-01	97.3%	40.6%
4946818	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.52	46.0	3.29e-01	100.0%	59.1%
5007096	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.51	42.0	3.52e-01	91.8%	85.4%
3930770	2007.1.2.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor	0.51	43.0	3.10e-01	100.0%	94.4%
4992089	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.51	44.0	3.89e-01	97.3%	88.2%
5080467	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.51	45.0	3.67e-01	100.0%	72.9%
5023505	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.51	41.0	3.39e-01	89.0%	82.2%
3274209	7064.1.1.1 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1	0.51	41.0	3.26e-01	93.2%	77.0%
4938242	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.50	41.0	3.43e-01	89.0%	86.9%
4939647	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.50	40.0	3.06e-01	87.7%	62.2%
4999942	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.50	42.0	3.30e-01	90.4%	75.3%
4940368	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.50	40.0	3.44e-01	89.0%	91.2%

D2 medium residues 76-121_190-257

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03115.21 best	Astro_capsid_N	63.7	2.40e-17	56.1%	25.7%
PF03115.21	Astro_capsid_N	34.0	2.80e-08	44.7%	18.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ewnA01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.94	91.0	7.50e-01	100.0%	98.9%
2ws9300	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.71	64.0	5.13e-01	100.0%	80.5%
2tbvA00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.70	65.0	4.75e-01	100.0%	58.4%
4rft000	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.69	64.0	5.59e-01	100.0%	98.2%
5k0uB00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.68	62.0	4.86e-01	100.0%	78.3%
1sixA00	2.70.40.10	Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase)	0.53	31.0	2.82e-01	97.4%	41.2%
4nx9A02	2.60.40.4390	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	36.0	3.59e-01	95.6%	68.6%
3gm8A02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	29.0	3.04e-01	99.1%	59.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1877512	10.2.1.32 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Astro_capsid_N	0.92	87.0	7.18e-01	98.2%	97.8%
146646	10.2.1.30 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › SP2	0.84	78.0	6.40e-01	98.2%	92.7%
1562394	1.1.8.6 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA	0.52	34.0	3.51e-01	93.9%	68.5%
3746837	11.2.1.23 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2	0.50	35.0	3.03e-01	100.0%	43.7%

D3 medium residues 122-189

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03115.21 best	Astro_capsid_N	68.9	6.50e-19	100.0%	26.9%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ewnA01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.97	93.0	6.46e-01	100.0%	37.0%
4fy1100	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.75	67.0	4.65e-01	100.0%	30.9%
3vbhC00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.71	60.0	4.12e-01	100.0%	26.9%
5aca300	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.70	61.0	4.27e-01	100.0%	30.2%
3cjiB00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.70	59.0	4.10e-01	100.0%	27.3%
1tme300	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.68	57.0	4.02e-01	100.0%	28.3%
6sk6A00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.60	51.0	3.49e-01	100.0%	27.1%
3gldA02	2.60.40.1140	Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain	0.55	41.0	3.41e-01	98.5%	41.9%
1ex0A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	43.0	3.68e-01	88.2%	54.4%
4oq1A03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	39.0	3.51e-01	83.8%	57.4%
5tf0B03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	40.0	3.52e-01	88.2%	54.1%
1hq6B00	3.50.20.10	Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B	0.50	39.0	2.81e-01	88.2%	77.6%
1cwvA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	37.0	3.40e-01	88.2%	59.1%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1877512	10.2.1.32 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Astro_capsid_N	0.95	91.0	6.35e-01	100.0%	37.0%
4967716	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.61	47.0	4.31e-01	88.2%	62.1%
3630685	10.32.1.228 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SID-1_RNA_chan	0.60	52.0	4.26e-01	100.0%	62.3%
3369057	12.3.1.2 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid	0.58	44.0	3.22e-01	85.3%	67.3%
1731080	10.2.1.21 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Ilar_coat	0.58	41.0	3.33e-01	100.0%	36.3%
3413537	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	41.0	3.52e-01	86.8%	61.7%
4289881	10.32.1.17 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase	0.53	40.0	3.21e-01	86.8%	90.6%
3715576	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	41.0	3.34e-01	88.2%	55.0%
3924429	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	39.0	3.53e-01	86.8%	55.2%
3925350	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.50	37.0	3.26e-01	83.8%	53.9%
3509252	12.1.1.34 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2	0.50	38.0	3.44e-01	85.3%	65.0%
5083479	11.1.1.1410 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg	0.50	37.0	3.57e-01	82.4%	72.5%

D4 medium residues 258-390

PDB

Domain cluster: rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442