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capsid_protein
Euk-VirXanthophyllomyces_dendrorhous_virus_L1B
capsid_protein__YP_009507834__Xanthophyllomyces_dendrorhous_virus_L1B__1167691
Identity
- Accession:
- YP_009507834 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
72.8
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Chrymotiviricetes›
Ghabrivirales›
Orthototiviridae›
Totivirus›
Xanthophyllomyces_dendrorhous_virus_L1B
TaxID: 1167691
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-299_323-359
Domain cluster:
rep: hypothetical_protein_1__YP_009342433__Wuhan_insect_virus_27__1923731__D54-438
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 103.5 | 1.20e-29 | 85.5% | 53.6% |
D2
medium
residues 31-61_482-600
Domain cluster:
rep: capsid_protein__YP_007697650__Xanthophyllomyces_dendrorhous_virus_L1A__1167690__D33-48_448-609
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.79 | 74.0 | 4.73e-01 | 100.0% | 88.3% |
| 5kycB02 | 2.20.210.10 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily | 0.59 | 24.0 | 3.60e-01 | 95.3% | 100.0% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.56 | 26.0 | 2.96e-01 | 94.7% | 56.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7654 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.79 | 74.0 | 4.73e-01 | 100.0% | 88.3% |
| 5044011 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 29.0 | 3.85e-01 | 83.3% | 89.3% |
| 3244077 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.57 | 24.0 | 3.47e-01 | 96.7% | 91.7% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 27.0 | 3.64e-01 | 94.7% | 98.7% |
| 3488754 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 29.0 | 3.06e-01 | 96.0% | 60.0% |
| 3396979 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 31.0 | 3.68e-01 | 86.7% | 94.7% |
D3
medium
residues 300-322_360-481
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 34.4 | 1.10e-08 | 56.5% | 16.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.71 | 66.0 | 4.21e-01 | 100.0% | 27.8% |