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capsid_protein

Euk-Vir

Verticillium_dahliae_chrysovirus_1

capsid_protein__YP_009507946__Verticillium_dahliae_chrysovirus_1__759389

Identity

Accession:: YP_009507946 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

60.5 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Alphachrysovirus› Verticillium_dahliae_chrysovirus_1

TaxID: 759389

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 134-184

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	38.1	1.10e-09	100.0%	13.7%

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4gkfA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.67	58.0	4.20e-01	100.0%	69.2%
3of4A00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.65	56.0	3.76e-01	100.0%	50.2%
2oebA00	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.64	55.0	3.99e-01	100.0%	82.9%
5fcxA00	1.10.2090.10	Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain	0.63	50.0	3.67e-01	100.0%	32.4%
1aisB02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.62	45.0	3.72e-01	78.4%	81.9%
1irxA04	1.10.10.770	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.62	48.0	3.89e-01	100.0%	42.6%
2l09A01	1.10.8.550	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B	0.59	39.0	3.96e-01	84.3%	67.3%
1on2A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	45.0	4.10e-01	86.3%	86.1%
8dtqA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.59	44.0	3.85e-01	84.3%	96.3%
4go1A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	40.0	4.00e-01	72.5%	72.2%
2ppxA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.58	46.0	4.36e-01	86.3%	80.3%
7byjA01	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.57	47.0	3.71e-01	100.0%	49.2%
1x8zB00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.56	42.0	3.02e-01	100.0%	27.9%
2hxoA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.55	44.0	4.26e-01	100.0%	82.5%
2rhfA00	1.10.150.80	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain	0.54	47.0	4.20e-01	100.0%	100.0%
3szpA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	44.0	3.67e-01	92.2%	75.3%
1jkvA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.53	42.0	2.82e-01	100.0%	22.8%
1ef1A02	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.51	41.0	3.34e-01	100.0%	43.6%
3mggA02	6.10.140.1580	Special › Helix non-globular › Helix Hairpins ›	0.51	45.0	3.73e-01	100.0%	58.4%
4nqwA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	44.0	4.06e-01	100.0%	76.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3848311	155.1.1.1 ↗	alpha arrays › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP, Villin headpiece domain › VHP	0.68	53.0	4.70e-01	86.3%	77.3%
3546236	377.1.1.97 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › VHP	0.66	52.0	4.76e-01	88.2%	89.7%
3282811	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.66	41.0	4.50e-01	70.6%	80.0%
3798435	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.62	53.0	4.44e-01	98.0%	93.3%
5003639	2.21.1.0 ↗	beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB)	0.62	51.0	3.62e-01	100.0%	30.3%
4932863	101.1.2.947 ↗	alpha arrays › HTH › HTH › winged helix domain › PF27234	0.60	47.0	4.14e-01	100.0%	57.5%
4940562	179.1.1.0 ↗	alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like	0.60	49.0	4.67e-01	100.0%	78.3%
3623379	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	45.0	3.81e-01	90.2%	46.3%
4231800	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	48.0	3.99e-01	100.0%	56.8%
4182608	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.54	38.0	3.68e-01	76.5%	96.7%
3283959	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	45.0	3.85e-01	100.0%	58.9%

D2 medium residues 185-360

PDB

Domain cluster: rep: putative_coat_protein__YP_001531162__Alphachrysovirus_cerasi__284687__D184-333

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	231.3	2.20e-68	100.0%	48.1%

D3 medium residues 367-404_431-510

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	37.7	1.50e-09	35.6%	10.7%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2uyyA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.56	46.0	4.56e-01	89.0%	91.1%
3c64A00	1.20.58.830	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	35.0	3.21e-01	98.3%	48.7%
4fb9A02	4.10.470.10	Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2	0.53	36.0	3.77e-01	96.6%	77.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3671230	109.4.1.578 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3730	0.53	46.0	3.41e-01	98.3%	64.6%
3968859	4198.1.1.3 ↗	alpha arrays › TerB-like › TerB-like › TerB-like › DUF533	0.50	44.0	4.08e-01	100.0%	76.8%