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capsid_protein
Euk-VirHeterobasidion_partitivirus_8
capsid_protein__YP_009508064__Heterobasidion_partitivirus_8__1249677
Identity
- Accession:
- YP_009508064 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
48.8
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Partitiviridae›
Betapartitivirus›
Heterobasidion_partitivirus_8
TaxID: 1249677
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 91-115_158-188_266-295_327-348
Domain cluster:
representative
D2
medium
residues 116-157_296-326
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f16A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.63 | 53.0 | 3.92e-01 | 94.5% | 85.9% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 36.0 | 3.87e-01 | 100.0% | 67.2% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.59 | 52.0 | 4.44e-01 | 100.0% | 78.7% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.59 | 40.0 | 3.09e-01 | 71.2% | 98.2% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.56 | 35.0 | 2.77e-01 | 97.3% | 28.2% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 47.0 | 4.19e-01 | 98.6% | 99.1% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 35.0 | 3.39e-01 | 100.0% | 58.0% |
| 2oexA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.51 | 35.0 | 2.91e-01 | 71.2% | 82.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4412477 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.63 | 44.0 | 3.61e-01 | 72.6% | 58.4% |
| 3832828 | 148.1.3.205 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 | 0.55 | 46.0 | 4.44e-01 | 97.3% | 89.4% |
D3
medium
residues 189-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25666.2 best | Partiti_capsid | 43.8 | 2.10e-11 | 100.0% | 12.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 35.0 | 2.96e-01 | 100.0% | 35.3% |
| 3b81A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 38.0 | 2.96e-01 | 76.6% | 66.1% |
| 1i51B00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.52 | 45.0 | 4.23e-01 | 94.8% | 80.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3239394 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.68 | 39.0 | 4.12e-01 | 88.3% | 62.9% |
| 3327323 | 101.28.1.0 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins | 0.63 | 45.0 | 4.80e-01 | 90.9% | 90.8% |
| 3655597 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.62 | 47.0 | 5.07e-01 | 90.9% | 98.5% |
| 2541253 | 1003.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR_Cas9_WED | 0.58 | 34.0 | 2.84e-01 | 84.4% | 31.7% |
| 3349693 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 39.0 | 2.73e-01 | 74.0% | 89.2% |
| 3595156 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.55 | 47.0 | 4.48e-01 | 93.5% | 84.4% |
| 3320952 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.55 | 44.0 | 3.68e-01 | 88.3% | 54.1% |
| 3603739 | 101.1.1.498 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 | 0.55 | 36.0 | 2.42e-01 | 98.7% | 16.3% |
| 3286669 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 34.0 | 3.80e-01 | 90.9% | 94.5% |
D4
medium
residues 435-496