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capsid_protein
Euk-VirOphiostoma_partitivirus_1
capsid_protein__YP_009508237__Ophiostoma_partitivirus_1__347482
Identity
- Accession:
- YP_009508237 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
64.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Partitiviridae›
Gammapartitivirus›
Ophiostoma_partitivirus_1
TaxID: 347482
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 76-214_321-348
Domain cluster:
rep: capsid_protein__YP_009259751__Pseudogymnoascus_destructans_partitivirus-pa__1685502__D62-213_326-352
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20895.3 best | PsV_CP | 123.9 | 1.40e-35 | 83.2% | 31.1% |
D2
medium
residues 255-315
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20895.3 best | PsV_CP | 37.4 | 2.50e-09 | 100.0% | 16.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 3.47e-01 | 75.4% | 67.0% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 41.0 | 3.41e-01 | 86.9% | 47.6% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.73e-01 | 88.5% | 84.4% |
| 3memA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 41.0 | 2.75e-01 | 91.8% | 49.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 40.0 | 3.43e-01 | 90.2% | 64.3% |
| 4nn5A00 | 1.20.1250.90 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Thymic stromal lymphopoietin | 0.51 | 37.0 | 3.17e-01 | 80.3% | 76.1% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.51e-01 | 95.1% | 53.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3360311 | 601.18.1.18 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › DUF7880 | 0.60 | 43.0 | 3.33e-01 | 77.0% | 59.3% |
| 3886252 | 2007.9.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › SEFIR | 0.50 | 37.0 | 2.89e-01 | 85.2% | 48.1% |
D3
medium
residues 358-430