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capsid_protein
Euk-VirEquine_parvovirus_H
capsid_protein__YP_009552776__Equine_parvovirus_H__2079554
Identity
- Accession:
- YP_009552776 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
52.0
mean pLDDT
Taxonomy
TaxID: 2079554
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 191-289
Domain cluster:
rep: unnamed_protein_product__YP_005097852__Artibeus_jamaicensis_parvovirus_1__1131485__D280-360
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08398.16 best | Phospholip_A2_4 | 68.5 | 7.10e-19 | 82.8% | 98.8% |
D2
high
residues 407-630_848-971
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 135.8 | 2.50e-39 | 55.2% | 33.7% |
| PF00740.24 | VP1_2 | 53.7 | 1.90e-14 | 30.5% | 15.2% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.86 | 83.0 | 7.06e-01 | 100.0% | 98.3% |
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.84 | 82.0 | 6.94e-01 | 100.0% | 96.9% |
| 1c8dA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.83 | 80.0 | 6.70e-01 | 100.0% | 97.4% |
| 4qc8A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.82 | 80.0 | 6.87e-01 | 100.0% | 97.4% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.81 | 21.0 | 3.75e-01 | 85.1% | 67.2% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.78 | 22.0 | 3.92e-01 | 84.2% | 73.3% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.70 | 21.0 | 3.63e-01 | 84.8% | 74.6% |
| 2ws9201 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 36.0 | 4.78e-01 | 85.1% | 89.2% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 35.0 | 4.70e-01 | 97.7% | 90.8% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 24.0 | 4.24e-01 | 86.8% | 99.1% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 32.0 | 4.35e-01 | 97.7% | 84.1% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 36.0 | 4.93e-01 | 84.8% | 100.0% |
| 6l9iA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 20.0 | 2.83e-01 | 85.3% | 50.6% |
| 2izwC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 36.0 | 4.56e-01 | 99.1% | 88.0% |
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 36.0 | 4.82e-01 | 96.8% | 100.0% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 34.0 | 4.21e-01 | 97.7% | 79.3% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 37.0 | 4.34e-01 | 98.0% | 76.9% |
| 1b35A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 41.0 | 4.68e-01 | 94.8% | 83.5% |
| 2ztnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 36.0 | 4.78e-01 | 97.7% | 98.9% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 21.0 | 3.67e-01 | 81.9% | 87.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 21.0 | 3.41e-01 | 84.8% | 77.6% |
| 4rs5A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 37.0 | 4.57e-01 | 98.6% | 90.0% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 21.0 | 2.84e-01 | 86.2% | 53.5% |
| 1fmd100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 29.0 | 3.91e-01 | 92.5% | 81.3% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 37.0 | 4.51e-01 | 99.1% | 91.4% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 33.0 | 3.97e-01 | 97.4% | 75.5% |
| 2y26A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 30.0 | 4.26e-01 | 98.9% | 99.4% |
| 4qpiC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 34.0 | 4.02e-01 | 98.6% | 78.9% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 21.0 | 2.93e-01 | 96.6% | 61.9% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 34.0 | 4.20e-01 | 99.4% | 91.3% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.57 | 19.0 | 3.31e-01 | 85.9% | 87.1% |
| 1ji6A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 21.0 | 3.08e-01 | 98.0% | 72.8% |
| 1tme200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 39.0 | 4.48e-01 | 98.6% | 96.9% |
| 5c8cB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 37.0 | 4.09e-01 | 98.9% | 82.9% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 37.0 | 4.22e-01 | 99.1% | 91.9% |
| 1o91A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 22.0 | 3.49e-01 | 83.0% | 99.2% |
| 3thpA02 | 2.60.120.1520 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 23.0 | 3.46e-01 | 85.6% | 94.1% |
| 2yc2A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 21.0 | 3.46e-01 | 83.0% | 100.0% |
| 1pgsA02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 26.0 | 3.62e-01 | 85.3% | 96.0% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 3.89e-01 | 87.6% | 80.9% |
| 3k4zA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 25.0 | 3.58e-01 | 84.8% | 100.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4880563 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.90 | 49.0 | 6.88e-01 | 94.8% | 100.0% |
| 2990572 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.86 | 84.0 | 7.01e-01 | 100.0% | 98.5% |
| 1195 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.86 | 83.0 | 7.06e-01 | 100.0% | 98.3% |
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.84 | 82.0 | 6.91e-01 | 100.0% | 97.3% |
| 4884619 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.83 | 81.0 | 6.67e-01 | 100.0% | 97.0% |
| 2707659 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.82 | 80.0 | 6.82e-01 | 100.0% | 95.4% |
| 2142463 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.82 | 80.0 | 6.70e-01 | 100.0% | 97.2% |
| 3107798 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.82 | 80.0 | 6.68e-01 | 100.0% | 97.2% |
| 5058198 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.74 | 20.0 | 3.58e-01 | 85.1% | 69.6% |
| 1034414 | 10.2.1.16 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_NS1 | 0.70 | 60.0 | 5.59e-01 | 87.6% | 85.4% |
| 3473996 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.70 | 54.0 | 6.01e-01 | 88.8% | 97.9% |
| 178766 | 10.2.1.53 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › IHHNV_capsid | 0.70 | 52.0 | 5.57e-01 | 86.8% | 87.0% |
| 5033161 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.68 | 28.0 | 4.55e-01 | 83.3% | 100.0% |
| 3106452 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.67 | 56.0 | 5.30e-01 | 86.8% | 88.6% |
| 1112407 | 10.2.1.28 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Denso_VP4 | 0.63 | 53.0 | 5.17e-01 | 87.1% | 89.4% |
| 3404051 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 29.0 | 4.35e-01 | 85.1% | 100.0% |
| 5039565 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 25.0 | 4.03e-01 | 82.8% | 100.0% |
| 3607284 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 20.0 | 3.24e-01 | 87.6% | 76.2% |
| 2990501 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.58 | 55.0 | 5.37e-01 | 97.1% | 98.1% |
| 3511357 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 26.0 | 3.97e-01 | 81.6% | 100.0% |
| 3075118 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.54 | 38.0 | 4.38e-01 | 98.9% | 95.4% |
| 4021313 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 22.0 | 3.25e-01 | 83.9% | 82.3% |
| 3602118 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 18.0 | 3.12e-01 | 83.9% | 93.3% |
| 4466937 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.52 | 19.0 | 3.01e-01 | 85.1% | 82.3% |
D3
medium
residues 47-112