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capsid_protein
Euk-VirPicobirnavirus_sp.
capsid_protein__YP_009553305__Picobirnavirus_sp.__1907787
Identity
- Accession:
- YP_009553305 ↗
- Protein ID:
- capsid_protein
- Kingdom:
- euk
Quality
51.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Picobirnaviridae›
Orthopicobirnavirus›
Picobirnavirus_sp.
TaxID: 1907787
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 457-480_494-542
D2
medium
residues 113-143_188-208_233-266_347-361
D3
medium
residues 144-187_209-232_267-346
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vf1A04 | 1.20.140.120 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.78 | 72.0 | 7.08e-01 | 95.3% | 100.0% |
| 2xl4A00 | 1.20.120.1420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › LntA helical domain | 0.65 | 45.0 | 4.54e-01 | 92.6% | 70.7% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 40.0 | 4.80e-01 | 91.2% | 95.1% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 46.0 | 4.64e-01 | 82.4% | 85.4% |
| 6wbvA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 49.0 | 3.55e-01 | 90.5% | 91.4% |
| 2nrjA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.57 | 47.0 | 3.63e-01 | 88.5% | 96.7% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 39.0 | 4.34e-01 | 71.6% | 100.0% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 38.0 | 4.30e-01 | 89.9% | 97.2% |
| 4bemJ00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.53 | 38.0 | 3.62e-01 | 75.0% | 87.8% |
| 6gyhA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 37.0 | 3.25e-01 | 100.0% | 47.6% |
| 6o7uc01 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.52 | 38.0 | 3.55e-01 | 75.7% | 78.9% |
| 3x3bA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 40.0 | 3.30e-01 | 82.4% | 81.2% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 38.0 | 3.43e-01 | 79.1% | 72.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184927 | 3549.1.1.0 ↗ | a+b complex topology › Capsid protein › Capsid protein › Capsid protein | 0.91 | 88.0 | 5.77e-01 | 100.0% | 38.9% |
| 4882099 | 3549.1.1.1 ↗ | a+b complex topology › Capsid protein › Capsid protein › Capsid protein › PBV_CP | 0.89 | 85.0 | 5.70e-01 | 100.0% | 41.3% |
| 2675346 | 3549.1.1.0 ↗ | a+b complex topology › Capsid protein › Capsid protein › Capsid protein | 0.89 | 85.0 | 5.63e-01 | 100.0% | 39.3% |
| 3772490 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.58 | 45.0 | 3.57e-01 | 81.1% | 72.3% |
| 3174376 | 109.4.1.3127 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31194 | 0.54 | 39.0 | 2.87e-01 | 91.2% | 27.9% |
| 4169514 | 5050.1.1.54 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp | 0.54 | 46.0 | 4.34e-01 | 91.9% | 84.9% |
| 3239575 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.54 | 47.0 | 3.71e-01 | 93.2% | 61.0% |
| 3998686 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.53 | 45.0 | 3.77e-01 | 92.6% | 70.4% |
| 3969345 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 45.0 | 4.00e-01 | 92.6% | 75.5% |
| 4281061 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.53 | 25.0 | 2.88e-01 | 85.8% | 57.4% |
| 3724303 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 40.0 | 4.12e-01 | 99.3% | 82.1% |
| 3970522 | 5050.1.1.54 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp | 0.52 | 44.0 | 4.15e-01 | 91.9% | 84.9% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.51 | 37.0 | 3.31e-01 | 75.7% | 79.0% |