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capsid_protein

Euk-Vir

Macrophomina_phaseolina_chrysovirus_1

capsid_protein__YP_009667010__Macrophomina_phaseolina_chrysovirus_1__1708483

Identity

Accession:: YP_009667010 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

64.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Alphachrysovirus› Macrophomina_phaseolina_chrysovirus_1

TaxID: 1708483

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 184-349

PDB

Domain cluster: rep: putative_coat_protein__YP_001531162__Alphachrysovirus_cerasi__284687__D184-333

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	246.5	5.10e-73	100.0%	45.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1m1cA00	3.90.1840.10	Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein	0.77	73.0	4.74e-01	100.0%	33.8%
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.57	24.0	3.59e-01	86.7%	90.3%
3pxpA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.53	28.0	3.52e-01	86.7%	87.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1291942	4065.1.1.2 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_N	0.92	89.0	6.07e-01	100.0%	33.3%
4821589	4065.1.1.1 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat	0.76	72.0	5.27e-01	100.0%	50.7%
1291943	4065.1.1.3 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_C	0.75	70.0	4.96e-01	100.0%	36.6%

D2 medium residues 37-133_445-525

PDB

Domain cluster: rep: coat_protein__YP_009667014__Colletotrichum_gloeosporioides_chrysovirus_1__1766766__D76-116_373-427_432-523

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	50.8	1.50e-13	48.9%	14.8%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4njcA00	3.10.20.730	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like	0.55	21.0	3.28e-01	72.5%	93.3%
1mvpA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.54	25.0	3.10e-01	75.8%	67.9%
4rlzA02	2.40.30.120	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses	0.53	27.0	3.30e-01	96.1%	75.5%
8afoA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	25.0	3.27e-01	100.0%	86.4%
4i3gA04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	25.0	3.08e-01	72.5%	70.2%
6x3aA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	27.0	3.47e-01	100.0%	87.5%
1fhvA02	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.51	28.0	3.24e-01	79.8%	73.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1291942	4065.1.1.2 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_N	0.77	71.0	4.99e-01	97.2%	89.0%
4027417	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.62	26.0	4.10e-01	74.7%	100.0%
3615884	11.1.1.1189 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › XRCC1_N	0.61	24.0	3.78e-01	76.4%	92.8%
5033281	304.100.1.1 ↗	a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS	0.60	24.0	3.89e-01	71.9%	100.0%
5028431	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.59	25.0	3.51e-01	71.3%	81.2%
5038655	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.58	24.0	3.41e-01	73.6%	80.0%
3237033	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.56	23.0	3.00e-01	74.7%	67.0%
3513270	11.1.1.239 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3	0.54	26.0	3.43e-01	84.8%	83.2%
3894335	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	26.0	3.25e-01	100.0%	78.0%
5035919	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	22.0	2.71e-01	71.9%	58.3%
4950854	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	25.0	3.38e-01	81.5%	92.2%

D3 medium residues 134-183

PDB

Domain cluster: rep: capsid_protein__YP_009337889__Isaria_javanica_chrysovirus_1__1930960__D126-186

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	42.8	4.10e-11	100.0%	13.4%

D4 medium residues 356-444

PDB

Domain cluster: rep: putative_coat_protein__YP_001531162__Alphachrysovirus_cerasi__284687__D363-450

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	109.7	1.90e-31	100.0%	24.0%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3tl4X02	1.10.10.2420	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.65	44.0	4.72e-01	86.5%	84.7%
2wauA01	1.20.1310.20	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain	0.64	51.0	4.27e-01	87.6%	59.4%
8gccA03	1.10.268.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3	0.63	46.0	4.39e-01	95.5%	65.4%
2js5A00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.60	39.0	4.33e-01	83.1%	83.1%
1m5iA00	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.55	42.0	3.99e-01	83.1%	67.6%
4zi3D00	1.20.1520.10	Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain	0.54	45.0	4.11e-01	96.6%	85.9%
3himA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	47.0	3.73e-01	98.9%	54.7%
8e9gD01	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.53	48.0	3.09e-01	100.0%	45.0%
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	42.0	3.85e-01	84.3%	72.3%
4eeiA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.51	36.0	3.60e-01	73.0%	77.2%
2qywA00	1.20.58.400	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins	0.51	40.0	3.92e-01	83.1%	86.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3699072	6126.1.1.1 ↗	alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 › DUF5600	0.77	63.0	5.65e-01	95.5%	64.2%
3613690	6126.1.1.1 ↗	alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 › DUF5600	0.72	62.0	5.43e-01	96.6%	63.8%
4026684	192.20.1.7 ↗	alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729	0.63	39.0	3.75e-01	95.5%	52.4%
3169125	4015.1.1.1 ↗	alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1	0.59	42.0	2.98e-01	74.2%	95.4%
3919099	621.1.1.8 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1	0.57	50.0	4.34e-01	95.5%	90.4%
3473137	604.9.1.2 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Strabismus	0.55	47.0	4.54e-01	95.5%	88.0%
3659871	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.54	46.0	3.93e-01	88.8%	89.6%
3896888	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.50	42.0	3.78e-01	92.1%	80.0%

D5 medium residues 676-740

PDB

D6 medium residues 825-985

PDB