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capsid_protein

Euk-Vir

Chrysothrix_chrysovirus_1

capsid_protein__YP_010088085__Chrysothrix_chrysovirus_1__2682569

Identity

Accession:: YP_010088085 ↗
Protein ID:: capsid_protein
Kingdom:: euk

Quality

71.9 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Alphachrysovirus› Chrysothrix_chrysovirus_1

TaxID: 2682569

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-124_181-208_223-264_300-336_359-521

PDB

Domain cluster: representative

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	107.8	7.30e-31	28.1%	25.7%
PF21685.4	Fungal_virus_P2_N	67.6	1.30e-18	21.8%	23.5%
PF21685.4	Fungal_virus_P2_N	60.2	2.20e-16	13.4%	11.5%
PF21685.4	Fungal_virus_P2_N	33.0	4.10e-08	11.3%	10.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mvpA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.51	14.0	2.44e-01	95.8%	67.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1291942	4065.1.1.2 ↗	a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › Fungal_virus_P2_N	0.84	82.0	6.92e-01	99.7%	84.7%

D2 medium residues 125-180

PDB

Domain cluster: rep: capsid_protein__YP_009337889__Isaria_javanica_chrysovirus_1__1930960__D126-186

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	51.2	1.20e-13	100.0%	14.8%

D3 medium residues 209-222_265-299_337-358

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21685.4 best	Fungal_virus_P2_N	34.6	1.30e-08	67.6%	10.7%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ptmA00	3.40.718.10	Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase	0.50	34.0	2.33e-01	71.8%	38.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3960364	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.52	38.0	2.78e-01	80.3%	60.0%

D4 medium residues 713-771

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22144.2 best	Fungal_virus_P2_C	86.1	3.20e-24	100.0%	13.7%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.72	49.0	4.09e-01	71.2%	87.4%
2hsnA02	1.20.1050.110	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.67	46.0	3.84e-01	72.9%	63.6%
1k92A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.61	51.0	3.89e-01	100.0%	68.8%
2qbyA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.61	52.0	3.85e-01	100.0%	53.8%
1ho8A02	1.25.40.150	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain	0.61	49.0	4.09e-01	93.2%	72.3%
4gf0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	43.0	3.53e-01	74.6%	81.4%
3mvcB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.60	49.0	3.73e-01	94.9%	73.4%
2fulB00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	48.0	3.61e-01	96.6%	48.4%
1cpcB00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.58	45.0	3.27e-01	86.4%	51.7%
3rimB01	3.40.50.970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains	0.56	39.0	2.48e-01	74.6%	80.7%
6p8vA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	46.0	3.25e-01	96.6%	95.3%
1xl3C00	1.20.1280.80	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.53	40.0	3.67e-01	91.5%	92.3%
2idgA00	1.10.3480.10	Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like	0.52	45.0	3.28e-01	94.9%	43.4%
1k90B03	1.20.140.60	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.52	37.0	3.06e-01	78.0%	98.3%
1ehyA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	44.0	2.88e-01	100.0%	23.0%
6vu9A02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	41.0	2.68e-01	89.8%	31.0%
3dl1A01	1.10.472.150	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain	0.50	31.0	2.68e-01	94.9%	36.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3806665	109.4.1.1495 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522	0.64	49.0	3.13e-01	88.1%	65.7%
4998508	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.64	55.0	3.91e-01	100.0%	68.9%
3782614	109.4.1.33 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT	0.63	48.0	3.60e-01	88.1%	87.1%
3433575	101.1.1.138 ↗	alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD	0.62	48.0	4.15e-01	86.4%	100.0%
3356077	109.4.1.1616 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Trm732_C	0.61	50.0	3.26e-01	94.9%	57.1%
3261206	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	46.0	3.76e-01	93.2%	62.4%
3916753	220.1.1.1 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH	0.57	44.0	3.34e-01	89.8%	48.8%
3271526	633.1.1.1 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain	0.56	38.0	3.18e-01	72.9%	79.1%
3713912	633.21.1.22 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc	0.53	38.0	3.12e-01	78.0%	85.0%
5075717	4033.1.1.1 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N	0.52	40.0	3.32e-01	94.9%	80.0%
4001651	109.4.1.1264 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16	0.52	43.0	2.55e-01	100.0%	15.4%

D5 medium residues 772-865

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22144.2 best	Fungal_virus_P2_C	171.8	3.10e-50	100.0%	20.2%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3b9qA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.66	44.0	4.55e-01	80.9%	71.9%
4o6mA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.62	51.0	4.05e-01	89.4%	90.3%
2fsfB04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.61	43.0	3.42e-01	75.5%	82.5%
3ed5A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.56	37.0	3.85e-01	81.9%	73.8%
1m6nA04	1.10.3060.10	Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA	0.55	42.0	3.74e-01	81.9%	66.7%
3c4rA00	1.10.3600.10	Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT	0.55	37.0	3.47e-01	84.0%	54.0%
3s5rB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	44.0	3.53e-01	94.7%	94.9%
3t57A02	1.20.1180.10	Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	0.52	29.0	3.16e-01	84.0%	65.3%
1zoyD00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.52	36.0	3.60e-01	73.4%	84.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3754188	3896.1.2.3 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase › PF28421	0.58	47.0	4.21e-01	93.6%	62.3%
3170471	3896.1.2.0 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase	0.58	48.0	4.62e-01	96.8%	78.0%
3659374	3896.1.1.4 ↗	alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › PF28421	0.55	46.0	3.41e-01	94.7%	35.5%
3651791	109.4.1.189 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2	0.54	44.0	3.11e-01	88.3%	32.9%
5046582	3921.1.1.3 ↗	alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › GDT1	0.54	39.0	3.19e-01	76.6%	85.4%
3281853	191.1.1.0 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain	0.52	44.0	4.02e-01	96.8%	94.8%
3702921	148.1.3.10 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6	0.52	39.0	4.22e-01	80.9%	100.0%
3572246	601.7.1.37 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Las1	0.51	37.0	3.24e-01	76.6%	99.3%
3390957	5069.1.3.4 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS	0.50	35.0	3.41e-01	73.4%	80.0%
3401856	601.34.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › F-actin binding domain of Abl › F-actin binding domain of Abl › F_actin_bind	0.50	37.0	3.53e-01	77.7%	78.2%

D6 medium residues 866-947

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22144.2 best	Fungal_virus_P2_C	158.1	4.50e-46	96.3%	17.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3938709	109.4.1.1837 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BP28CT, U3snoRNP10	0.55	47.0	2.68e-01	100.0%	11.0%
5073956	131.1.1.3 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD	0.52	42.0	3.40e-01	93.9%	88.0%