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capsid_protein_precursor
Euk-VirAstrovirus_VA1
capsid_protein_precursor__YP_003090288__Astrovirus_VA1__645687
Identity
- Accession:
- YP_003090288 ↗
- Protein ID:
- capsid_protein_precursor
- Kingdom:
- euk
Quality
69.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
Astrovirus_VA1
TaxID: 645687
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-257
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 194.0 | 4.00e-57 | 96.2% | 71.5% |
D2
high
residues 261-387
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20751.3 best | SP2_M | 26.1 | 1.10e-05 | 97.6% | 73.0% |
D3
high
residues 417-576_607-679
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 29.0 | 4.05e-01 | 100.0% | 98.2% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 26.0 | 3.78e-01 | 100.0% | 98.0% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.56 | 25.0 | 3.27e-01 | 92.7% | 73.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 24.0 | 3.38e-01 | 83.7% | 83.6% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 25.0 | 3.04e-01 | 93.6% | 66.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970394 | 4252.1.1.10 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 | 0.54 | 29.0 | 3.85e-01 | 82.8% | 93.8% |
| 3292384 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.52 | 26.0 | 3.17e-01 | 92.7% | 69.0% |
| 3422167 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.50 | 24.0 | 3.34e-01 | 75.5% | 93.5% |