capsid_protein_precursor

Euk-Vir

Macrobrachium_rosenbergii_Taihu_virus

capsid_protein_precursor__YP_006666504__Macrobrachium_rosenbergii_Taihu_virus__1027947

Identity

70.7 mean pLDDT

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Dicistroviridae› Macrobrachium_rosenbergii_Taihu_virus

TaxID: 1027947

View cluster (173 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 388-408_863-1028

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337767__Sanxia_picorna-like_virus_3__1923372__D664-871

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08762.17 best	CRPV_capsid	119.1	2.80e-34	89.3%	90.0%

D2 high residues 620-798

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ejkA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.60	41.0	4.39e-01	87.7%	79.6%
2h6cA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	31.0	3.58e-01	100.0%	69.0%
4o9gA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.58	38.0	4.20e-01	87.7%	82.6%
6fxrA01	2.60.120.620	Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain	0.56	41.0	3.92e-01	74.9%	100.0%
4ev0D01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.56	32.0	3.65e-01	97.8%	72.3%
2pqqA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.55	34.0	3.71e-01	95.0%	73.5%
7pzaA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	29.0	3.36e-01	96.1%	73.0%
4mzuF02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	37.0	4.01e-01	98.3%	85.1%
4e2qA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	47.0	4.17e-01	97.8%	74.0%
6b9tF02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.52	31.0	3.92e-01	89.4%	98.2%
2xhkB01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.51	30.0	3.52e-01	95.0%	82.1%
3kt4A02	3.60.130.20	Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain	0.50	45.0	3.74e-01	97.2%	91.5%
1yudA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.50	35.0	3.76e-01	70.9%	85.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4065104	10.12.1.1 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding	0.62	32.0	3.94e-01	83.8%	76.5%
3999209	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.55	32.0	3.82e-01	96.6%	84.2%
1557261	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.53	33.0	4.04e-01	97.2%	99.1%
3910447	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.52	35.0	4.09e-01	82.7%	93.8%
4997709	10.12.1.39 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2	0.52	34.0	3.94e-01	91.6%	95.1%
3232928	10.12.1.1 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding	0.51	34.0	3.59e-01	79.9%	73.8%
3722051	10.12.1.53 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3	0.50	40.0	3.92e-01	84.9%	95.0%

D3 medium residues 111-146_225-267

PDB

Domain cluster: representative

D4 medium residues 413-603

PDB

Domain cluster: rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305