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capsid_protein_precursor

Euk-Vir

Bovine_astrovirus_B76_HK

capsid_protein_precursor__YP_009010945__Bovine_astrovirus_B76_HK__1027248

Identity

Accession:
YP_009010945 ↗
Protein ID:
capsid_protein_precursor
Kingdom:
euk

Quality

73.1 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Mamastrovirus› Bovine_astrovirus_B76/HK

TaxID: 1027248

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 694-757
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.90 46.0 4.14e-01 100.0% 39.3%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.88 43.0 5.10e-01 95.3% 68.9%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.86 43.0 3.30e-01 90.6% 24.6%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.64 47.0 4.67e-01 100.0% 73.5%
1c3cA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.58 36.0 3.36e-01 100.0% 49.4%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 44.0 2.81e-01 81.2% 49.3%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 44.0 3.25e-01 92.2% 52.5%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.84e-01 95.3% 47.1%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.50 45.0 3.63e-01 96.9% 55.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1247957 191.1.1.18 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 0.79 42.0 3.42e-01 93.8% 29.8%
2514721 172.1.1.1 ↗ alpha complex topology › Citrate synthase-like › Citrate synthase › Citrate synthase › Citrate_synt 0.73 46.0 3.67e-01 73.4% 34.2%
4351255 191.1.1.91 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › PF29842 0.52 49.0 4.31e-01 100.0% 85.6%
1070120 191.1.1.15 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.51 40.0 3.47e-01 93.8% 54.1%
3603861 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.50 44.0 3.70e-01 100.0% 56.4%
D2 medium residues 94-277
PDB
Domain cluster: rep: coat_protein__YP_009237527__Lake_Sarah-associated_circular_virus-14_Viruses.__X__D77-111_199-281_337-370
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03115.21 best Astro_capsid_N 184.0 4.50e-54 96.2% 72.3%
PF03014.21 SP2 27.2 4.10e-06 92.9% 76.1%
D3 medium residues 278-405
PDB
Domain cluster: rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
D4 medium residues 421-501
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3961791 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.62 33.0 3.74e-01 87.7% 68.3%
D5 medium residues 502-663
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 20.0 3.07e-01 85.8% 67.7%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 20.0 2.94e-01 89.5% 71.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880974 1.1.7.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Astro_capsid_p 0.67 54.0 4.81e-01 87.0% 61.6%
3390360 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 31.0 4.04e-01 89.5% 87.1%
5034001 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.58 29.0 4.03e-01 87.7% 95.2%
3824961 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.54 24.0 2.83e-01 79.0% 56.4%
3712361 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 25.0 2.68e-01 81.5% 49.3%
5022900 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 29.0 3.70e-01 88.3% 93.7%
4009835 11.1.1.93 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 0.51 28.0 3.61e-01 88.9% 91.6%
5068789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 31.0 3.85e-01 92.6% 99.0%