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capsid_protein_precursor
Euk-VirBovine_astrovirus
capsid_protein_precursor__YP_009041464__Bovine_astrovirus__1435485
Identity
- Accession:
- YP_009041464 ↗
- Protein ID:
- capsid_protein_precursor
- Kingdom:
- euk
Quality
73.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Mamastrovirus›
Bovine_astrovirus
TaxID: 1435485
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 91-275
Domain cluster:
rep: coat_protein__YP_009237527__Lake_Sarah-associated_circular_virus-14_Viruses.__X__D77-111_199-281_337-370
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03115.21 best | Astro_capsid_N | 184.5 | 3.20e-54 | 96.2% | 72.3% |
| PF03014.21 | SP2 | 38.1 | 1.90e-09 | 83.8% | 74.2% |
CATH (81)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ewnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.96 | 93.0 | 9.39e-01 | 99.5% | 100.0% |
| 2ztnA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.90 | 87.0 | 8.65e-01 | 100.0% | 98.4% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.90 | 78.0 | 8.23e-01 | 97.8% | 98.8% |
| 3zxaC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.90 | 76.0 | 7.56e-01 | 97.8% | 84.7% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.89 | 75.0 | 7.98e-01 | 98.4% | 98.2% |
| 6mrmC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.86 | 75.0 | 7.83e-01 | 96.8% | 97.0% |
| 4llfD01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.86 | 76.0 | 7.76e-01 | 98.4% | 93.8% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.85 | 74.0 | 7.46e-01 | 98.4% | 90.2% |
| 2izwC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.84 | 76.0 | 7.28e-01 | 100.0% | 83.2% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.83 | 71.0 | 6.69e-01 | 98.4% | 75.2% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.83 | 77.0 | 7.83e-01 | 96.2% | 100.0% |
| 4qpiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.82 | 72.0 | 6.75e-01 | 98.9% | 77.9% |
| 3napB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 74.0 | 6.61e-01 | 100.0% | 71.3% |
| 5j98B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.81 | 77.0 | 6.72e-01 | 100.0% | 79.6% |
| 5mqcB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.80 | 71.0 | 6.53e-01 | 98.9% | 74.9% |
| 4qpiC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 75.0 | 6.74e-01 | 100.0% | 78.0% |
| 2tbvA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 76.0 | 6.42e-01 | 100.0% | 65.4% |
| 1ihmB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 73.0 | 6.88e-01 | 100.0% | 81.8% |
| 2gh8A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 68.0 | 6.64e-01 | 98.4% | 83.2% |
| 1smvC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 76.0 | 7.03e-01 | 100.0% | 87.4% |
| 5aooC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 72.0 | 6.73e-01 | 100.0% | 80.9% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 73.0 | 6.33e-01 | 100.0% | 77.5% |
| 1f2nC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 74.0 | 7.03e-01 | 100.0% | 86.8% |
| 1b35C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 73.0 | 6.26e-01 | 100.0% | 71.3% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 74.0 | 6.97e-01 | 100.0% | 87.2% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 63.0 | 6.40e-01 | 100.0% | 85.8% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 73.0 | 6.49e-01 | 100.0% | 74.9% |
| 5mqcC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 73.0 | 6.41e-01 | 100.0% | 76.9% |
| 2ws9201 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 69.0 | 6.77e-01 | 96.8% | 88.7% |
| 2ws9300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 72.0 | 6.72e-01 | 100.0% | 81.9% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 72.0 | 6.80e-01 | 98.9% | 83.9% |
| 2y26A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 63.0 | 5.10e-01 | 94.1% | 46.8% |
| 3jb8A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 71.0 | 7.18e-01 | 99.5% | 97.8% |
| 3cjiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 71.0 | 6.48e-01 | 100.0% | 81.5% |
| 5c8cB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 72.0 | 6.06e-01 | 99.5% | 70.3% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 69.0 | 6.48e-01 | 100.0% | 81.1% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 71.0 | 6.39e-01 | 100.0% | 80.6% |
| 1pgw200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 69.0 | 5.45e-01 | 100.0% | 51.6% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 70.0 | 6.38e-01 | 100.0% | 80.0% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 67.0 | 6.12e-01 | 100.0% | 74.3% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 69.0 | 6.39e-01 | 100.0% | 80.9% |
| 7chkB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.73 | 51.0 | 5.96e-01 | 92.4% | 100.0% |
| 1a6cA02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 60.0 | 6.28e-01 | 98.9% | 97.6% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.72 | 48.0 | 5.34e-01 | 95.1% | 85.4% |
| 2y26A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 57.0 | 6.07e-01 | 98.9% | 98.8% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 64.0 | 5.29e-01 | 97.3% | 76.8% |
| 6eiwA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 62.0 | 6.15e-01 | 96.2% | 100.0% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 63.0 | 5.24e-01 | 97.8% | 76.1% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 64.0 | 5.56e-01 | 100.0% | 75.1% |
| 4rs5A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 64.0 | 6.00e-01 | 100.0% | 88.7% |
| 1mec100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 62.0 | 5.41e-01 | 98.9% | 81.4% |
| 2ws9100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 63.0 | 5.69e-01 | 100.0% | 80.5% |
| 2d73A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.67 | 31.0 | 3.96e-01 | 94.1% | 71.7% |
| 1b35A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 62.0 | 5.48e-01 | 98.9% | 80.4% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 62.0 | 5.47e-01 | 100.0% | 74.3% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 62.0 | 5.40e-01 | 100.0% | 72.4% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 49.0 | 5.09e-01 | 96.2% | 83.9% |
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.65 | 60.0 | 4.31e-01 | 100.0% | 95.6% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 59.0 | 5.50e-01 | 100.0% | 80.1% |
| 3j4uH00 | 2.60.120.1110 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 42.0 | 4.78e-01 | 90.8% | 89.3% |
| 3napA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 56.0 | 4.97e-01 | 100.0% | 71.2% |
| 4p02B01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 43.0 | 4.97e-01 | 94.1% | 100.0% |
| 6mnjA01 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 46.0 | 5.01e-01 | 90.8% | 94.8% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 49.0 | 5.25e-01 | 95.7% | 99.4% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 4.88e-01 | 94.6% | 100.0% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.59 | 33.0 | 3.98e-01 | 93.5% | 82.5% |
| 4mxwD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 4.76e-01 | 94.6% | 100.0% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 43.0 | 4.73e-01 | 94.6% | 97.3% |
| 1ex0A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 4.34e-01 | 89.7% | 98.2% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 4.26e-01 | 89.7% | 98.2% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 44.0 | 4.78e-01 | 92.4% | 99.4% |
| 5yotA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.88e-01 | 92.4% | 88.9% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 43.0 | 4.61e-01 | 94.1% | 97.4% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 45.0 | 4.65e-01 | 93.0% | 93.3% |
| 5tf0B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 30.0 | 3.71e-01 | 91.9% | 90.1% |
| 1o59A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 43.0 | 4.38e-01 | 95.1% | 89.3% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 4.21e-01 | 95.1% | 99.2% |
| 2dmkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.81e-01 | 87.0% | 100.0% |
| 5z9sA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 31.0 | 3.69e-01 | 92.4% | 88.6% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 44.0 | 4.54e-01 | 93.5% | 100.0% |
| 1upsB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 45.0 | 3.96e-01 | 95.1% | 95.5% |
ECOD (83)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1877512 | 10.2.1.32 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Astro_capsid_N | 0.94 | 89.0 | 8.99e-01 | 97.3% | 97.8% |
| 1693524 | 10.2.1.49 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN | 0.90 | 76.0 | 7.75e-01 | 98.4% | 88.4% |
| 1724852 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.90 | 78.0 | 8.25e-01 | 98.4% | 98.8% |
| 146646 | 10.2.1.30 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › SP2 | 0.90 | 84.0 | 8.33e-01 | 97.3% | 92.7% |
| 2539045 | 10.2.1.12 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Luteo_coat | 0.90 | 67.0 | 7.55e-01 | 96.8% | 96.6% |
| 2542980 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.86 | 75.0 | 7.43e-01 | 97.3% | 86.4% |
| 1758310 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.86 | 76.0 | 7.30e-01 | 98.4% | 81.9% |
| 1693522 | 10.2.1.49 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid-VNN | 0.85 | 74.0 | 7.49e-01 | 98.4% | 90.3% |
| 328688 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.84 | 76.0 | 7.28e-01 | 100.0% | 83.2% |
| 2441244 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.84 | 81.0 | 7.52e-01 | 100.0% | 85.0% |
| 4882965 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.83 | 58.0 | 6.45e-01 | 93.5% | 88.4% |
| 1400716 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.82 | 72.0 | 6.75e-01 | 98.9% | 77.9% |
| 2044957 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.81 | 77.0 | 6.88e-01 | 100.0% | 78.0% |
| 2389609 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.81 | 77.0 | 6.97e-01 | 100.0% | 78.7% |
| 1867996 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.80 | 72.0 | 6.26e-01 | 98.9% | 65.4% |
| 4888111 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.80 | 71.0 | 7.06e-01 | 99.5% | 89.9% |
| 1696117 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.80 | 68.0 | 6.88e-01 | 97.3% | 89.1% |
| 215519 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.80 | 77.0 | 6.41e-01 | 100.0% | 89.8% |
| 1405130 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.80 | 75.0 | 6.76e-01 | 100.0% | 78.0% |
| 2793614 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.79 | 71.0 | 6.69e-01 | 99.5% | 80.4% |
| 4814721 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.79 | 71.0 | 6.85e-01 | 100.0% | 85.6% |
| 289259 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.79 | 76.0 | 7.00e-01 | 100.0% | 86.2% |
| 4900996 | 10.2.1.88 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat | 0.79 | 61.0 | 6.13e-01 | 88.1% | 79.9% |
| 4872939 | 10.2.1.13 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat | 0.78 | 72.0 | 6.86e-01 | 100.0% | 85.2% |
| 3344591 | 10.2.1.81 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MP | 0.78 | 58.0 | 5.61e-01 | 96.2% | 68.8% |
| 1232 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.78 | 74.0 | 7.30e-01 | 100.0% | 99.0% |
| 3314257 | 10.32.1.193 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP | 0.78 | 58.0 | 5.97e-01 | 96.2% | 80.6% |
| 2099164 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.78 | 73.0 | 6.26e-01 | 100.0% | 71.3% |
| 1234 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.77 | 74.0 | 7.35e-01 | 100.0% | 99.0% |
| 2099173 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 73.0 | 6.35e-01 | 99.5% | 83.6% |
| 2862065 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.77 | 63.0 | 6.53e-01 | 98.4% | 89.7% |
| 1949031 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 73.0 | 6.41e-01 | 100.0% | 76.9% |
| 1233 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.77 | 73.0 | 7.32e-01 | 100.0% | 97.4% |
| 2099184 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.77 | 72.0 | 6.06e-01 | 100.0% | 75.0% |
| 1444532 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.77 | 72.0 | 6.81e-01 | 98.9% | 83.9% |
| 31171 | 10.2.1.15 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat | 0.77 | 63.0 | 6.30e-01 | 100.0% | 84.0% |
| 2726763 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 72.0 | 6.20e-01 | 100.0% | 77.9% |
| 139106 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.77 | 72.0 | 6.72e-01 | 100.0% | 81.9% |
| 1866058 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.76 | 71.0 | 7.18e-01 | 99.5% | 97.8% |
| 2044958 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 72.0 | 6.37e-01 | 100.0% | 76.4% |
| 3075118 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 73.0 | 6.35e-01 | 100.0% | 82.1% |
| 169772 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.76 | 71.0 | 6.48e-01 | 100.0% | 81.5% |
| 1945727 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 71.0 | 6.28e-01 | 100.0% | 75.7% |
| 1687952 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 69.0 | 6.48e-01 | 100.0% | 81.1% |
| 2439648 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 70.0 | 6.09e-01 | 100.0% | 74.0% |
| 1489398 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.75 | 70.0 | 6.29e-01 | 100.0% | 78.1% |
| 1215 | 10.2.1.34 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat | 0.74 | 63.0 | 6.55e-01 | 96.8% | 95.9% |
| 1219 | 10.2.1.24 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_LCP | 0.74 | 68.0 | 6.83e-01 | 100.0% | 96.3% |
| 2983138 | 10.2.1.88 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat | 0.74 | 69.0 | 6.32e-01 | 100.0% | 79.8% |
| 31099 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.74 | 69.0 | 6.39e-01 | 100.0% | 80.9% |
| 2414126 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.73 | 67.0 | 6.09e-01 | 100.0% | 75.1% |
| 143449 | 10.2.1.34 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat | 0.73 | 63.0 | 6.42e-01 | 96.2% | 95.5% |
| 1216 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.72 | 60.0 | 6.28e-01 | 98.9% | 97.6% |
| 2665487 | 10.2.1.103 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Vp24_capsid | 0.71 | 55.0 | 6.06e-01 | 99.5% | 100.0% |
| 1866052 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.71 | 59.0 | 5.70e-01 | 100.0% | 77.9% |
| 3478158 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 43.0 | 5.14e-01 | 91.4% | 89.6% |
| 1886797 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.70 | 64.0 | 5.74e-01 | 98.4% | 75.1% |
| 143450 | 10.2.1.37 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nepo_coat_C | 0.70 | 57.0 | 6.07e-01 | 98.9% | 98.8% |
| 1713715 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.69 | 65.0 | 5.54e-01 | 100.0% | 69.8% |
| 2579092 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.69 | 64.0 | 5.65e-01 | 100.0% | 82.4% |
| 152483 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.69 | 64.0 | 5.54e-01 | 100.0% | 70.4% |
| 1204 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.69 | 64.0 | 5.48e-01 | 100.0% | 69.5% |
| 1114663 | 10.2.1.22 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 | 0.68 | 62.0 | 5.09e-01 | 97.8% | 71.2% |
| 2710690 | 10.2.1.29 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Circo_capsid | 0.67 | 62.0 | 6.02e-01 | 97.3% | 91.5% |
| 140694 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.67 | 63.0 | 5.68e-01 | 100.0% | 80.5% |
| 3272798 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.67 | 47.0 | 5.44e-01 | 93.0% | 98.5% |
| 148379 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.67 | 62.0 | 5.24e-01 | 100.0% | 67.3% |
| 4835076 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.64 | 52.0 | 5.21e-01 | 85.9% | 98.4% |
| 1106655 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.64 | 59.0 | 5.73e-01 | 100.0% | 97.5% |
| 3062996 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.62 | 30.0 | 3.41e-01 | 95.7% | 59.0% |
| 3282993 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.61 | 45.0 | 4.89e-01 | 95.1% | 92.0% |
| 140026 | 10.2.1.44 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › CRPV_capsid | 0.61 | 56.0 | 4.97e-01 | 100.0% | 71.2% |
| 1852013 | 11.1.5.40 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BNR_assoc_N | 0.61 | 47.0 | 4.95e-01 | 92.4% | 88.7% |
| 3593524 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 49.0 | 4.73e-01 | 94.1% | 97.6% |
| 3531351 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.56 | 44.0 | 4.05e-01 | 95.7% | 64.2% |
| 3832080 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 39.0 | 2.77e-01 | 92.4% | 23.6% |
| 3183713 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.54 | 32.0 | 3.77e-01 | 91.9% | 84.8% |
| 3168473 | 10.32.1.306 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF30096 | 0.53 | 46.0 | 4.65e-01 | 94.1% | 97.9% |
| 1297259 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.52 | 45.0 | 4.24e-01 | 94.6% | 98.7% |
| 4217288 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.52 | 44.0 | 4.48e-01 | 90.8% | 100.0% |
| 3904967 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.51 | 32.0 | 3.91e-01 | 88.6% | 100.0% |
| 3278369 | 10.32.1.31 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C | 0.51 | 44.0 | 4.10e-01 | 93.5% | 99.1% |
| 3406920 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.50 | 32.0 | 3.85e-01 | 88.1% | 99.1% |
D2
high
residues 279-399
Domain cluster:
rep: capsid_protein__NP_056788__Hepeviridae__291484__D322-442
D3
high
residues 425-658
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 24.0 | 3.51e-01 | 81.2% | 91.9% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 21.0 | 3.18e-01 | 92.3% | 92.0% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 23.0 | 2.92e-01 | 94.0% | 70.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4880974 | 1.1.7.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Astro_capsid_p | 0.70 | 62.0 | 6.39e-01 | 97.4% | 98.6% |
| 3876835 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.53 | 23.0 | 2.89e-01 | 95.7% | 63.8% |
| 3840640 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.52 | 22.0 | 2.78e-01 | 94.0% | 60.7% |
| 5013082 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.51 | 28.0 | 3.49e-01 | 99.1% | 87.4% |
D4
high
residues 699-769
Domain cluster:
rep: capsid_protein_precursor__YP_009010945__Bovine_astrovirus_B76_HK__1027248__D694-757