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capsid_protein_precursor_pIIIa

Euk-Vir

Pigeon_adenovirus_2

capsid_protein_precursor_pIIIa__YP_009310432__Pigeon_adenovirus_2__1907767

Identity

Accession:: YP_009310432 ↗
Protein ID:: capsid_protein_precursor_pIIIa
Kingdom:: euk

Quality

65.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Pigeon_adenovirus_2

TaxID: 1907767

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-264

PDB

Domain cluster: rep: pIIIa__YP_007347001__Bovine_adenovirus_6__111167__D107-214

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	236.3	1.00e-69	100.0%	27.6%

D2 high residues 309-400

PDB

Domain cluster: rep: pIIIa__NP_077392__Bovine_atadenovirus_D__130499__D257-346

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	123.9	1.20e-35	100.0%	17.1%

D3 medium residues 4-107

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02455.22 best	Hex_IIIa	77.3	1.60e-21	45.2%	8.7%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1jogA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.63	47.0	4.32e-01	98.1%	60.7%
1rq0A01	6.10.140.160	Special › Helix non-globular › Helix Hairpins ›	0.60	40.0	4.43e-01	80.8%	86.7%
6cgvM01	1.20.120.1500	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa	0.57	49.0	4.47e-01	99.0%	70.9%
4id0A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	30.0	3.02e-01	78.8%	49.1%
3r6nB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	43.0	3.40e-01	86.5%	54.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4864636	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.90	51.0	5.35e-01	93.3%	61.9%
4823692	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.60	52.0	4.75e-01	99.0%	71.4%
2643579	7008.1.1.1 ↗	alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa	0.59	50.0	4.80e-01	96.2%	78.6%
3177741	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.58	42.0	4.28e-01	82.7%	79.0%
4634395	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.56	42.0	4.27e-01	82.7%	79.0%
3276268	1025.1.1.0 ↗	alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain	0.55	37.0	3.65e-01	80.8%	63.6%
4018548	1025.1.1.0 ↗	alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain	0.55	38.0	3.78e-01	83.7%	68.2%
4081848	7013.1.1.1 ↗	alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1	0.54	44.0	3.61e-01	91.3%	90.0%