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capsid_triplex_subunit_1
Euk-VirMeleagrid_alphaherpesvirus_1
capsid_triplex_subunit_1__NP_073332__Meleagrid_alphaherpesvirus_1__37108
Identity
- Accession:
- NP_073332 ↗
- Protein ID:
- capsid_triplex_subunit_1
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Meleagrid_alphaherpesvirus_1
TaxID: 37108
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 117-295
Domain cluster:
rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 76.1 | 4.40e-21 | 85.5% | 46.8% |
D2
medium
residues 296-372
Domain cluster:
rep: capsid_triplex_subunit_1__YP_182367__Gallid_alphaherpesvirus_1__10386__D288-362
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 68.0 | 1.40e-18 | 100.0% | 30.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hw4A01 | 3.50.20.20 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus | 0.69 | 46.0 | 4.09e-01 | 85.7% | 48.2% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 47.0 | 4.09e-01 | 72.7% | 88.9% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 39.0 | 4.21e-01 | 72.7% | 96.9% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.57 | 38.0 | 3.51e-01 | 70.1% | 95.3% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 40.0 | 3.50e-01 | 87.0% | 49.2% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.53 | 43.0 | 3.30e-01 | 94.8% | 86.3% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.84e-01 | 74.0% | 72.6% |
| 2x7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 40.0 | 3.24e-01 | 87.0% | 54.5% |
| 3og5A01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 34.0 | 3.39e-01 | 71.4% | 96.5% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 40.0 | 3.15e-01 | 89.6% | 92.7% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 38.0 | 3.30e-01 | 87.0% | 56.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4017450 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.58 | 44.0 | 3.19e-01 | 80.5% | 79.5% |
| 4161565 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 39.0 | 3.68e-01 | 71.4% | 69.5% |
| 3600530 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 42.0 | 3.14e-01 | 81.8% | 91.7% |
| 3711085 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 42.0 | 3.06e-01 | 80.5% | 94.6% |
| 5051456 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 42.0 | 3.17e-01 | 80.5% | 89.2% |
| 5050858 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.54 | 42.0 | 3.25e-01 | 87.0% | 95.8% |
| 5045317 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 41.0 | 3.12e-01 | 81.8% | 85.6% |
| 4946320 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 42.0 | 3.52e-01 | 87.0% | 85.2% |
| 3713423 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 40.0 | 2.98e-01 | 81.8% | 86.7% |
| 3166276 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.53 | 40.0 | 2.74e-01 | 83.1% | 92.3% |
| 3912477 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.53 | 38.0 | 2.61e-01 | 79.2% | 79.4% |
| 3406040 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 39.0 | 3.02e-01 | 80.5% | 91.4% |
| 5046183 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 41.0 | 2.90e-01 | 84.4% | 77.9% |
| 5044379 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 39.0 | 3.01e-01 | 80.5% | 90.6% |
| 3436847 | 2.2.1.12 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › DUF7851 | 0.51 | 35.0 | 3.08e-01 | 71.4% | 87.9% |
| 3470904 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.51 | 39.0 | 2.95e-01 | 80.5% | 88.1% |
| 3909872 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 38.0 | 2.88e-01 | 80.5% | 84.1% |
| 5070528 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.51 | 39.0 | 3.04e-01 | 84.4% | 93.5% |
| 3253418 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 38.0 | 2.80e-01 | 80.5% | 75.6% |
| 3702873 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 38.0 | 2.82e-01 | 85.7% | 95.1% |
| 4972532 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.50 | 38.0 | 3.66e-01 | 84.4% | 84.4% |
D3
medium
residues 415-470
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 51.7 | 1.20e-13 | 96.4% | 19.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ebjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 38.0 | 3.00e-01 | 75.0% | 77.3% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 38.0 | 2.54e-01 | 80.4% | 54.7% |
| 2yvlA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 35.0 | 2.47e-01 | 98.2% | 21.2% |