←Back to structures

capsid_triplex_subunit_1

Euk-Vir

Psittacid_alphaherpesvirus_1

capsid_triplex_subunit_1__NP_944411__Psittacid_alphaherpesvirus_1__50294

Identity

Accession:
NP_944411 ↗
Protein ID:
capsid_triplex_subunit_1
Kingdom:
euk

Quality

65.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Psittacid_alphaherpesvirus_1

TaxID: 50294

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 110-293
PDB
Domain cluster: rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03327.20 best Herpes_VP19C 74.9 1.00e-20 81.5% 46.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 25.0 3.15e-01 89.1% 54.1%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.67 22.0 3.10e-01 89.1% 57.5%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 32.0 3.52e-01 90.2% 61.6%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 31.0 3.48e-01 73.4% 71.3%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 19.0 2.33e-01 90.2% 46.2%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 18.0 2.59e-01 90.2% 66.3%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.50 30.0 3.40e-01 77.2% 77.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4654097 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.69 23.0 2.56e-01 92.9% 35.5%
3280896 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.52 40.0 3.47e-01 78.8% 80.7%
1546319 633.11.1.1 ↗ alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.51 28.0 3.64e-01 83.2% 98.0%
D2 medium residues 294-376_432-486
PDB
Domain cluster: rep: capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247__D166-291
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03327.20 best Herpes_VP19C 143.9 9.40e-42 99.3% 51.3%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 33.0 3.62e-01 79.7% 55.4%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 35.0 3.97e-01 79.7% 67.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 33.0 4.40e-01 79.0% 98.5%
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 34.0 3.92e-01 79.7% 70.1%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 33.0 4.40e-01 77.5% 98.6%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 33.0 3.54e-01 78.3% 61.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.59 28.0 3.50e-01 73.2% 75.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 33.0 3.55e-01 78.3% 62.3%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 33.0 3.55e-01 78.3% 63.8%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.73e-01 79.0% 72.1%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.57 27.0 2.89e-01 77.5% 47.1%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 30.0 3.70e-01 71.7% 84.8%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 33.0 4.10e-01 97.1% 98.8%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 30.0 3.38e-01 80.4% 64.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 33.0 3.59e-01 79.0% 70.3%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.51e-01 79.0% 73.5%
2gysA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.59e-01 87.7% 81.4%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.52 32.0 3.54e-01 92.0% 76.4%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.51 38.0 2.40e-01 76.1% 90.3%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 29.0 3.72e-01 70.3% 100.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.51 34.0 3.66e-01 100.0% 80.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 33.0 3.89e-01 76.1% 97.8%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 33.0 3.53e-01 78.3% 76.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3846627 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 35.0 4.01e-01 79.0% 65.0%
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.69 36.0 4.87e-01 84.1% 100.0%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.66 32.0 4.44e-01 70.3% 98.4%
3179842 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.63 36.0 3.84e-01 79.7% 64.2%
3490255 11.1.4.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.61 31.0 3.53e-01 79.0% 64.0%
3227513 3115.1.1.3 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.60 36.0 4.02e-01 89.1% 77.1%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 29.0 4.06e-01 73.9% 100.0%
3965010 3115.4.1.1 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.59 38.0 4.54e-01 78.3% 100.0%
3331651 11.1.4.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.59 39.0 3.92e-01 79.7% 65.7%
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 46.0 3.45e-01 88.4% 63.7%
4947414 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 3.75e-01 79.7% 71.7%
4332626 3532.1.1.0 ↗ alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.53 44.0 2.89e-01 88.4% 31.4%
3585676 11.1.1.593 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS7_C 0.53 34.0 3.51e-01 86.2% 67.4%
3829376 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 37.0 3.65e-01 79.0% 68.3%
3252089 4139.1.1.1 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.52 32.0 3.33e-01 78.3% 64.8%