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capsid_triplex_subunit_1
Euk-VirSaimiriine_betaherpesvirus_4
capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247
Identity
- Accession:
- YP_004940218 ↗
- Protein ID:
- capsid_triplex_subunit_1
- Kingdom:
- euk
Quality
83.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Saimiriine_betaherpesvirus_4
TaxID: 1535247
Cluster
View cluster (43 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 62-154
Domain cluster:
rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 67.0 | 2.70e-18 | 100.0% | 36.1% |
D2
high
residues 166-291
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 70.9 | 1.70e-19 | 100.0% | 51.3% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eddA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 36.0 | 3.81e-01 | 86.5% | 53.6% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 37.0 | 4.09e-01 | 86.5% | 62.7% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.70 | 37.0 | 4.82e-01 | 86.5% | 95.5% |
| 2hw4A01 | 3.50.20.20 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus | 0.68 | 44.0 | 4.71e-01 | 93.7% | 74.5% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 37.0 | 4.06e-01 | 87.3% | 66.3% |
| 1blwA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 35.0 | 3.88e-01 | 86.5% | 64.7% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.64 | 30.0 | 4.14e-01 | 79.4% | 100.0% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 34.0 | 4.27e-01 | 77.8% | 91.5% |
| 4oo1I01 | 2.40.50.880 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 27.0 | 3.34e-01 | 94.4% | 66.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 32.0 | 3.84e-01 | 78.6% | 82.3% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.57 | 34.0 | 3.49e-01 | 85.7% | 59.3% |
| 1ywhA01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.57 | 36.0 | 4.24e-01 | 97.6% | 97.5% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.57 | 34.0 | 3.52e-01 | 85.7% | 60.7% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 35.0 | 3.74e-01 | 86.5% | 70.0% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 33.0 | 3.49e-01 | 87.3% | 63.9% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 34.0 | 3.43e-01 | 85.7% | 58.0% |
| 6we5A00 | 3.90.80.10 | Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase | 0.55 | 44.0 | 3.78e-01 | 85.7% | 65.0% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 33.0 | 3.45e-01 | 85.7% | 62.9% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.81e-01 | 92.1% | 77.1% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.53 | 34.0 | 3.62e-01 | 92.1% | 73.0% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.42e-01 | 86.5% | 69.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688945 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.70 | 39.0 | 4.11e-01 | 86.5% | 60.0% |
| 3409626 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.69 | 46.0 | 4.86e-01 | 93.7% | 76.4% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.68 | 35.0 | 4.64e-01 | 77.8% | 95.3% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.68 | 46.0 | 4.77e-01 | 94.4% | 74.8% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.68 | 35.0 | 4.45e-01 | 77.8% | 87.3% |
| 3933347 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 37.0 | 4.17e-01 | 87.3% | 70.5% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 35.0 | 4.55e-01 | 81.0% | 98.5% |
| 3490255 | 11.1.4.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 | 0.62 | 33.0 | 3.64e-01 | 86.5% | 63.0% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.61 | 43.0 | 4.91e-01 | 86.5% | 100.0% |
| 3280008 | 3115.1.1.2 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 | 0.61 | 42.0 | 4.91e-01 | 82.5% | 100.0% |
| 4568546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 32.0 | 3.34e-01 | 79.4% | 52.1% |
| 3230319 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 36.0 | 4.31e-01 | 94.4% | 96.2% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 32.0 | 3.85e-01 | 77.8% | 82.7% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.58 | 47.0 | 3.46e-01 | 88.1% | 52.1% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.58 | 37.0 | 4.43e-01 | 80.2% | 96.5% |
| 3396683 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 35.0 | 4.32e-01 | 94.4% | 97.5% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.57 | 46.0 | 3.03e-01 | 88.1% | 31.1% |
| 4199730 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 41.0 | 4.41e-01 | 96.8% | 89.5% |
| 3959474 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.57 | 32.0 | 3.14e-01 | 79.4% | 47.9% |
| 3873657 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.56 | 37.0 | 3.15e-01 | 87.3% | 39.1% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.55 | 39.0 | 4.20e-01 | 90.5% | 86.7% |
| 3608234 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 32.0 | 3.17e-01 | 76.2% | 51.9% |
| 3350520 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 44.0 | 3.12e-01 | 87.3% | 60.8% |
| 3411474 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.54 | 41.0 | 3.81e-01 | 94.4% | 63.1% |
| 3905094 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.51 | 36.0 | 3.53e-01 | 73.0% | 85.9% |