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capsid_triplex_subunit_1
Euk-VirFruit_bat_alphaherpesvirus_1
capsid_triplex_subunit_1__YP_009042100__Fruit_bat_alphaherpesvirus_1__1343901
Identity
- Accession:
- YP_009042100 ↗
- Protein ID:
- capsid_triplex_subunit_1
- Kingdom:
- euk
Quality
76.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Pteropodid_alphaherpesvirus_1
TaxID: 1343901
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 105-288
Domain cluster:
rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 80.9 | 1.60e-22 | 77.7% | 49.8% |
D2
medium
residues 289-357_428-462
Domain cluster:
rep: capsid_triplex_subunit_1__YP_164481__Cercopithecine_alphaherpesvirus_2__10317__D295-353_402-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 43.9 | 3.00e-11 | 68.3% | 27.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 22.0 | 3.29e-01 | 87.5% | 68.9% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 37.0 | 4.45e-01 | 89.4% | 92.3% |
| 3mcsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 3.33e-01 | 76.9% | 100.0% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 41.0 | 3.95e-01 | 88.5% | 66.7% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.56 | 31.0 | 3.55e-01 | 82.7% | 72.7% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.53 | 26.0 | 3.47e-01 | 76.0% | 92.3% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 36.0 | 4.05e-01 | 76.0% | 98.7% |