capsid_triplex_subunit_1

Euk-Vir

Macropodid_alphaherpesvirus_1

capsid_triplex_subunit_1__YP_009227271__Macropodid_alphaherpesvirus_1__137443

Identity

75.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macropodid_alphaherpesvirus_1

TaxID: 137443

View cluster (32 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 110-241

PDB

Domain cluster: rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	46.4	5.30e-12	80.3%	36.9%

D2 medium residues 242-284_423-447

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	33.2	5.60e-08	70.6%	16.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1t9zA00	3.40.50.1000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like	0.53	37.0	2.71e-01	72.1%	75.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014095	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.51	34.0	3.63e-01	85.3%	80.0%
3668492	2484.1.1.15 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39	0.50	43.0	2.67e-01	100.0%	81.3%

D3 medium residues 285-347_396-422

PDB

Domain cluster: rep: capsid_triplex_subunit_1__YP_164481__Cercopithecine_alphaherpesvirus_2__10317__D295-353_402-425

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	58.8	8.60e-16	96.7%	29.7%