←Back to structures
capsid_triplex_subunit_1
Euk-VirCanid_alphaherpesvirus_1
capsid_triplex_subunit_1__YP_009252246__Canid_alphaherpesvirus_1__170325
Identity
- Accession:
- YP_009252246 ↗
- Protein ID:
- capsid_triplex_subunit_1
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Canid_alphaherpesvirus_1
TaxID: 170325
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 101-275
Domain cluster:
rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 56.4 | 4.50e-15 | 56.0% | 27.0% |
D2
medium
residues 276-355_399-457
Domain cluster:
rep: capsid_triplex_subunit_1__YP_164481__Cercopithecine_alphaherpesvirus_2__10317__D295-353_402-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03327.20 best | Herpes_VP19C | 104.5 | 9.40e-30 | 98.6% | 51.3% |
D3
medium
residues 359-389
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dn4A00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.51 | 37.0 | 2.87e-01 | 93.5% | 48.5% |