capsid_triplex_subunit_1

Euk-Vir

Macaca_nemestrina_herpesvirus_7

capsid_triplex_subunit_1__YP_009253933__Macaca_nemestrina_herpesvirus_7__1846169

Identity

87.3 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› macacine_betaherpesvirus_9

TaxID: 1846169

View cluster (43 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-147

PDB

Domain cluster: rep: capsid_assembly_and_DNA_maturation_protein-like_protein__YP_010087431__Vombatid_gammaherpesvirus_1__2052651__D70-204

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	64.5	1.60e-17	100.0%	41.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bhgA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.57	32.0	3.27e-01	100.0%	55.9%
2h41A00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	28.0	2.96e-01	81.5%	57.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5012955	1.1.7.128 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515	0.69	39.0	4.40e-01	98.1%	71.8%
3595111	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.56	30.0	3.94e-01	94.4%	100.0%
3697243	3468.1.1.1 ↗	a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN	0.53	41.0	3.84e-01	98.1%	67.7%

D2 high residues 160-283

PDB

Domain cluster: rep: capsid_triplex_subunit_1__YP_004940218__Saimiriine_betaherpesvirus_4__1535247__D166-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03327.20 best	Herpes_VP19C	81.4	1.10e-22	100.0%	50.6%