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capsid_triplex_subunit_1

Euk-Vir

Cercopithecine_alphaherpesvirus_2

capsid_triplex_subunit_1__YP_164481__Cercopithecine_alphaherpesvirus_2__10317

Identity

Accession:
YP_164481 ↗
Protein ID:
capsid_triplex_subunit_1
Kingdom:
euk

Quality

74.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 126-254
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03327.20 best Herpes_VP19C 60.3 3.00e-16 90.7% 39.2%
D2 medium residues 255-294_426-455
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03327.20 best Herpes_VP19C 27.2 3.80e-06 60.0% 13.7%
D3 medium residues 295-353_402-425
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03327.20 best Herpes_VP19C 63.8 2.50e-17 98.8% 29.3%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 38.0 3.04e-01 89.2% 27.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 44.0 4.33e-01 83.1% 58.7%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 40.0 3.53e-01 88.0% 39.8%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.68 38.0 4.22e-01 92.8% 68.2%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 44.0 4.89e-01 89.2% 86.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 43.0 3.43e-01 83.1% 32.3%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 43.0 4.73e-01 89.2% 82.1%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 42.0 4.00e-01 86.7% 52.9%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.66 42.0 4.88e-01 89.2% 100.0%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.65 45.0 5.12e-01 94.0% 100.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 45.0 3.54e-01 88.0% 34.1%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 40.0 3.94e-01 86.7% 59.1%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.63 41.0 3.42e-01 97.6% 37.8%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 49.0 5.11e-01 95.2% 94.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 40.0 3.89e-01 85.5% 59.6%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.61 41.0 4.21e-01 86.7% 74.0%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 47.0 4.95e-01 97.6% 98.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 40.0 3.73e-01 89.2% 53.2%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 3.26e-01 86.7% 42.1%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 46.0 3.58e-01 85.5% 75.1%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 4.08e-01 90.4% 93.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 49.0 5.11e-01 94.0% 100.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 42.0 4.06e-01 89.2% 65.6%
1qg3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 3.59e-01 88.0% 52.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 42.0 3.90e-01 84.3% 60.6%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 41.0 4.25e-01 90.4% 82.3%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.57 47.0 3.46e-01 92.8% 37.7%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 40.0 3.56e-01 86.7% 50.4%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 40.0 3.67e-01 88.0% 56.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 40.0 3.62e-01 86.7% 53.4%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 3.68e-01 85.5% 61.3%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.56 45.0 3.84e-01 89.2% 75.5%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 40.0 3.56e-01 89.2% 52.5%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.55 44.0 3.73e-01 89.2% 75.9%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.55 39.0 3.56e-01 88.0% 55.9%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 4.01e-01 83.1% 100.0%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.55 44.0 3.80e-01 89.2% 74.8%
4mkmA01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.42e-01 88.0% 45.2%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.55 43.0 3.48e-01 91.6% 42.4%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.54 44.0 3.14e-01 92.8% 99.6%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.54 41.0 3.86e-01 83.1% 98.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 41.0 3.73e-01 86.7% 59.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 47.0 3.12e-01 97.6% 47.0%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 40.0 3.77e-01 83.1% 98.1%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.52 43.0 3.32e-01 92.8% 73.1%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.52e-01 89.2% 61.5%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.57e-01 100.0% 95.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 49.0 5.50e-01 92.8% 93.8%
1442393 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 50.0 4.61e-01 95.2% 57.8%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 45.0 5.20e-01 86.7% 100.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 46.0 5.31e-01 88.0% 100.0%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.69 52.0 5.63e-01 95.2% 97.1%
5023972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 43.0 4.28e-01 90.4% 61.2%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 47.0 5.32e-01 88.0% 100.0%
3409700 4114.1.1.2 a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.69 50.0 4.50e-01 98.8% 55.7%
3413240 3115.1.1.3 a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.68 58.0 4.66e-01 94.0% 83.1%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 46.0 5.19e-01 88.0% 100.0%
3331651 11.1.4.8 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.67 50.0 4.24e-01 94.0% 47.1%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 44.0 4.48e-01 88.0% 69.6%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 49.0 5.45e-01 94.0% 100.0%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 48.0 5.26e-01 95.2% 100.0%
5045949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 46.0 4.23e-01 88.0% 56.2%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 45.0 5.07e-01 88.0% 100.0%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 51.0 5.15e-01 95.2% 83.1%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 55.0 5.59e-01 95.2% 96.2%
3894181 101.1.2.115 alpha arrays › HTH › HTH › winged helix domain › CDC27 0.64 41.0 3.20e-01 96.4% 30.3%
3179842 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.64 42.0 3.76e-01 92.8% 46.7%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 51.0 5.34e-01 95.2% 96.0%
4983090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 51.0 5.21e-01 95.2% 91.1%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 50.0 4.59e-01 95.2% 66.7%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.62 49.0 4.78e-01 95.2% 77.8%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 48.0 5.20e-01 94.0% 100.0%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 50.0 5.20e-01 95.2% 97.3%
4540568 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.62 53.0 4.19e-01 96.4% 94.3%
3338688 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 44.0 4.82e-01 88.0% 98.5%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 49.0 5.17e-01 94.0% 97.3%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 5.12e-01 95.2% 92.5%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 49.0 4.63e-01 95.2% 72.3%
3280008 3115.1.1.2 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.60 53.0 5.17e-01 96.4% 88.9%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 44.0 4.78e-01 88.0% 98.5%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 50.0 4.61e-01 95.2% 71.4%
4084879 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 49.0 4.92e-01 95.2% 88.2%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 47.0 4.10e-01 92.8% 54.1%
3999001 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.60 46.0 4.32e-01 89.2% 65.7%
4490981 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.60 39.0 3.63e-01 86.7% 50.9%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 50.0 5.02e-01 95.2% 90.6%
3874464 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 53.0 3.46e-01 100.0% 38.6%
3231372 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.59 43.0 3.81e-01 90.4% 50.8%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 48.0 4.98e-01 100.0% 100.0%
3217546 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 43.0 3.94e-01 92.8% 57.4%
4003316 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.58 45.0 3.98e-01 89.2% 56.0%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.58 46.0 3.80e-01 94.0% 47.1%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.58 50.0 4.98e-01 98.8% 92.9%
3213637 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 44.0 3.90e-01 94.0% 53.8%
4332626 3532.1.1.0 alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase 0.57 51.0 3.08e-01 100.0% 22.7%
3840563 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.57 41.0 3.30e-01 86.7% 37.1%
3220055 11.1.1.1023 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.57 42.0 3.73e-01 91.6% 51.5%
3214023 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 43.0 3.81e-01 92.8% 55.2%
5010503 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.86e-01 88.0% 65.3%
3236289 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 42.0 3.71e-01 91.6% 52.3%
3237716 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 42.0 3.69e-01 92.8% 50.7%
1442666 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 41.0 4.21e-01 92.8% 82.7%
3619496 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.19e-01 98.8% 28.7%
4976844 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.54 45.0 3.72e-01 96.4% 48.5%
4015784 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.50 40.0 2.86e-01 88.0% 33.8%