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capsid_triplex_subunit_2
Euk-VirCercopithecine_alphaherpesvirus_9
capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246
Identity
- Accession:
- NP_077456 ↗
- Protein ID:
- capsid_triplex_subunit_2
- Kingdom:
- euk
Quality
80.6
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Cercopithecine_alphaherpesvirus_9
TaxID: 35246
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-114_290-314
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01802.24 best | Herpes_V23 | 124.0 | 1.10e-35 | 87.6% | 37.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.64 | 28.0 | 3.83e-01 | 82.5% | 77.8% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 28.0 | 3.66e-01 | 82.5% | 78.1% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.59 | 26.0 | 3.55e-01 | 81.8% | 80.9% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.54 | 29.0 | 3.48e-01 | 71.5% | 77.7% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 29.0 | 3.50e-01 | 71.5% | 77.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263053 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.69 | 29.0 | 4.12e-01 | 82.5% | 80.0% |
| 4340002 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.66 | 28.0 | 3.97e-01 | 82.5% | 80.0% |
| 4166012 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.62 | 30.0 | 4.07e-01 | 70.8% | 86.7% |
| 3617006 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 34.0 | 3.83e-01 | 81.0% | 70.0% |
| 4930890 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 30.0 | 4.11e-01 | 71.5% | 92.0% |
| 137832 | 1.1.9.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 | 0.59 | 26.0 | 3.55e-01 | 81.8% | 80.9% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 32.0 | 3.82e-01 | 99.3% | 83.3% |
| 3893654 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.55 | 31.0 | 3.43e-01 | 72.3% | 67.0% |
| 4104961 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.54 | 29.0 | 3.61e-01 | 71.5% | 81.1% |
| 5050004 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.54 | 29.0 | 3.61e-01 | 81.8% | 81.1% |
| 3281973 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.54 | 29.0 | 3.54e-01 | 71.5% | 77.9% |
| 4011239 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 23.0 | 2.87e-01 | 84.7% | 62.5% |
| 3602123 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.54 | 27.0 | 3.53e-01 | 81.8% | 85.9% |
| 3391250 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 37.0 | 3.88e-01 | 71.5% | 86.9% |
| 3397088 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 37.0 | 4.04e-01 | 71.5% | 86.1% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.53 | 28.0 | 3.61e-01 | 81.8% | 87.5% |
| 4984743 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.53 | 29.0 | 3.51e-01 | 71.5% | 78.9% |
| 4944119 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.53 | 29.0 | 3.51e-01 | 71.5% | 78.9% |
| 3415703 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.53 | 30.0 | 3.59e-01 | 71.5% | 81.1% |
| 4994399 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.53 | 29.0 | 3.48e-01 | 71.5% | 78.9% |
| 3481480 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.52 | 30.0 | 3.51e-01 | 71.5% | 79.0% |
| 4162532 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.52 | 26.0 | 3.35e-01 | 97.1% | 85.3% |
| 3786521 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.52 | 32.0 | 3.49e-01 | 79.6% | 73.9% |
| 3386080 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.52 | 29.0 | 3.48e-01 | 71.5% | 79.0% |
| 3880866 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.51 | 29.0 | 3.33e-01 | 71.5% | 73.3% |
| 4379635 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.51 | 28.0 | 3.27e-01 | 81.8% | 75.8% |
D2
medium
residues 193-287