capsid_triplex_subunit_2

Euk-Vir

Chimpanzee_herpesvirus_strain_105640

capsid_triplex_subunit_2__YP_009011004__Chimpanzee_herpesvirus_strain_105640__332937

Identity

81.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Chimpanzee_herpesvirus_strain_105640

TaxID: 332937

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-114_127-137_293-316

PDB

Domain cluster: rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	113.2	2.20e-32	77.5%	34.5%

D2 high residues 200-289

PDB

D3 medium residues 115-126_138-199

PDB

Domain cluster: rep: capsid_triplex_subunit_2__YP_009342388__Spheniscid_alphaherpesvirus_1__2560777__D140-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	37.5	2.50e-09	100.0%	20.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o60A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.62	46.0	3.49e-01	79.7%	56.6%
4oseB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	44.0	3.01e-01	95.9%	58.5%
6ziwI02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.51	44.0	3.29e-01	94.6%	50.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3981354	2006.1.3.14 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF4435	0.57	44.0	3.17e-01	83.8%	51.6%
5045958	102.5.1.0 ↗	alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins	0.54	45.0	4.37e-01	98.6%	91.8%
3494220	212.1.1.9 ↗	a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair	0.54	43.0	3.44e-01	85.1%	95.0%
3287480	7579.1.1.6 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1	0.53	45.0	3.04e-01	95.9%	57.5%
3098534	101.1.1.20 ↗	alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A	0.52	39.0	3.30e-01	81.1%	90.5%
3953876	7579.1.1.95 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4	0.52	44.0	2.97e-01	95.9%	55.9%