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capsid_triplex_subunit_2
Euk-VirHuman_alphaherpesvirus_1
capsid_triplex_subunit_2__YP_009137092__Human_alphaherpesvirus_1__10298
Identity
- Accession:
- YP_009137092 ↗
- Protein ID:
- capsid_triplex_subunit_2
- Kingdom:
- euk
Quality
79.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Human_alphaherpesvirus_1
TaxID: 10298
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-143_293-316
Domain cluster:
rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01802.24 best | Herpes_V23 | 154.3 | 6.70e-45 | 86.9% | 44.6% |
D2
high
residues 144-187
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 50.0 | 3.51e-01 | 79.5% | 33.3% |
| 3jz3B01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.63 | 54.0 | 3.77e-01 | 100.0% | 79.1% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 2.90e-01 | 97.7% | 53.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011131 | 3860.1.1.205 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › PEX18_PEX21_C | 0.72 | 62.0 | 4.57e-01 | 100.0% | 45.0% |
| 3185432 | 605.1.1.189 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PEX18_PEX21_C | 0.72 | 61.0 | 4.96e-01 | 100.0% | 60.0% |
| 5017858 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 56.0 | 3.86e-01 | 100.0% | 30.3% |
| 3981354 | 2006.1.3.14 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF4435 | 0.62 | 50.0 | 3.31e-01 | 100.0% | 36.4% |
| 4890170 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 43.0 | 3.77e-01 | 77.3% | 57.9% |
| 3813073 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.60 | 54.0 | 3.50e-01 | 100.0% | 31.6% |
| 3956032 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.57 | 48.0 | 3.04e-01 | 100.0% | 51.5% |
| 4579662 | 247.1.1.51 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Lactamase_B_4, Anti-Pycsar_Apyc1 | 0.56 | 45.0 | 2.77e-01 | 97.7% | 27.5% |
| 4948984 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.55 | 45.0 | 2.92e-01 | 97.7% | 80.0% |
| 5024822 | 247.1.1.30 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 | 0.53 | 40.0 | 2.52e-01 | 90.9% | 43.0% |
D3
high
residues 198-289