capsid_triplex_subunit_2

Euk-Vir

Testudinid_alphaherpesvirus_3

capsid_triplex_subunit_2__YP_009176920__Testudinid_alphaherpesvirus_3__2560801

Identity

76.3 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Scutavirus› Testudinid_alphaherpesvirus_3

TaxID: 2560801

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-320

PDB

Domain cluster: rep: capsid_triplex_subunit_2__YP_001033946__Gallid_alphaherpesvirus_2__10390__D1-207_293-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	262.4	7.80e-78	98.7%	99.3%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.65	14.0	2.97e-01	73.3%	69.4%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.64	19.0	3.31e-01	75.2%	76.5%
1vhkA01	2.40.240.20	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1	0.59	13.0	2.95e-01	90.3%	80.8%
2rd0B00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	21.0	3.10e-01	93.4%	73.4%
3gg8C03	2.40.33.10	Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like	0.55	15.0	2.76e-01	91.8%	76.3%
2zdiB00	1.10.287.370	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	20.0	3.42e-01	92.1%	100.0%
3purA03	1.20.58.1360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	20.0	3.24e-01	81.1%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3709562	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	23.0	3.36e-01	76.1%	86.7%