←Back to structures
capsid_triplex_subunit_2
Euk-VirMacaca_nemestrina_herpesvirus_7
capsid_triplex_subunit_2__YP_009253963__Macaca_nemestrina_herpesvirus_7__1846169
Identity
- Accession:
- YP_009253963 ↗
- Protein ID:
- capsid_triplex_subunit_2
- Kingdom:
- euk
Quality
84.3
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Roseolovirus›
macacine_betaherpesvirus_9
TaxID: 1846169
Cluster
View cluster (76 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-132_272-291
Domain cluster:
rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01802.24 best | Herpes_V23 | 149.4 | 2.00e-43 | 88.7% | 44.9% |
D2
medium
residues 135-176
Domain cluster:
rep: hypothetical_protein_MuHV1_gp079__YP_214087__Murid_betaherpesvirus_1__10366__D138-179
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 56.0 | 3.73e-01 | 100.0% | 24.6% |
| 3qyfA03 | 1.10.10.1690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 | 0.63 | 45.0 | 3.96e-01 | 95.2% | 52.5% |
| 3ccfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 47.0 | 2.99e-01 | 92.9% | 16.4% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.57 | 44.0 | 3.13e-01 | 90.5% | 72.6% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 46.0 | 2.86e-01 | 95.2% | 52.7% |
| 2k5tA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 46.0 | 3.31e-01 | 100.0% | 33.6% |
| 2v4jA04 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.09e-01 | 83.3% | 94.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973226 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.74 | 57.0 | 4.17e-01 | 85.7% | 90.4% |
| 4257661 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.65 | 44.0 | 3.52e-01 | 97.6% | 34.4% |
| 5056061 | 225.2.1.1 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 | 0.65 | 52.0 | 3.24e-01 | 92.9% | 45.3% |
| 4928463 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.64 | 45.0 | 3.05e-01 | 97.6% | 19.0% |
| 3221366 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.55 | 38.0 | 3.50e-01 | 76.2% | 51.7% |
D3
medium
residues 185-269
Domain cluster:
rep: capsid_triplex_subunit_2__YP_073798__Human_betaherpesvirus_7__10372__D193-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01802.24 best | Herpes_V23 | 72.9 | 3.90e-20 | 100.0% | 28.4% |