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capsid_triplex_subunit_2

Euk-Vir

Beluga_whale_alphaherpesvirus_1

capsid_triplex_subunit_2__YP_010084973__Beluga_whale_alphaherpesvirus_1__1434720

Identity

Accession:: YP_010084973 ↗
Protein ID:: capsid_triplex_subunit_2
Kingdom:: euk

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Beluga_whale_alphaherpesvirus_1

TaxID: 1434720

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-116_289-314

PDB

Domain cluster: rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	121.4	6.60e-35	87.5%	36.1%

D2 high residues 203-286

PDB

D3 medium residues 117-202

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	78.6	7.60e-22	100.0%	29.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4l80D00	3.20.20.60	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains	0.55	43.0	2.92e-01	86.0%	77.0%
1pvgA01	3.30.565.10	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain	0.54	44.0	3.26e-01	91.9%	84.8%
1s12A00	3.30.70.1490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp	0.53	41.0	4.04e-01	82.6%	92.6%
5xwiA01	3.40.720.10	Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A	0.53	39.0	2.57e-01	77.9%	43.8%
4kdyB01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	33.0	3.46e-01	83.7%	71.2%
2rsxA00	3.10.450.420	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	36.0	2.99e-01	74.4%	96.9%
7l9pK01	3.30.900.10	Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain	0.51	39.0	3.51e-01	81.4%	89.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4671254	101.26.1.2 ↗	alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44	0.57	50.0	4.15e-01	98.8%	63.2%
4015766	4246.1.1.0 ↗	a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit	0.55	39.0	2.65e-01	77.9%	72.8%
3734034	109.4.1.1720 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IMB1, TPR_IPO5	0.54	42.0	2.33e-01	84.9%	6.6%
4628855	524.1.1.0 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p	0.54	37.0	2.85e-01	70.9%	86.8%
4520635	371.1.1.1 ↗	few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1	0.52	36.0	3.29e-01	72.1%	86.7%
5046816	102.1.4.2 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › Nop C-terminal domain › Transposase_20	0.52	36.0	3.31e-01	96.5%	52.5%
3406838	150.3.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine	0.51	38.0	3.02e-01	97.7%	38.3%
3244401	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.51	33.0	2.98e-01	72.1%	49.6%
4031693	2498.1.1.7 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3,Peptidase_M3_N	0.51	42.0	2.61e-01	95.3%	55.6%
3471405	223.7.1.1 ↗	a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like	0.51	41.0	3.62e-01	89.5%	64.6%