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cath

Euk-Vir

Catopsilia_pomona_nucleopolyhedrovirus

cath__YP_009255370__Catopsilia_pomona_nucleopolyhedrovirus__1850906

Identity

Accession:
YP_009255370 ↗
Protein ID:
cath
Kingdom:
euk

Quality

83.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-96
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08246.18 best Inhibitor_I29 58.2 1.20e-15 85.3% 100.0%
D2 medium residues 97-109_134-230
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 112.1 6.00e-32 93.6% 44.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.94 80.0 5.98e-01 88.2% 40.8%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.93 79.0 6.20e-01 88.2% 47.6%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.91 77.0 5.98e-01 88.2% 47.4%
1act000 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.90 77.0 5.92e-01 88.2% 46.3%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.90 76.0 5.78e-01 88.2% 43.4%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.88 75.0 5.43e-01 88.2% 40.4%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.88 84.0 5.60e-01 100.0% 39.4%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.85 81.0 5.67e-01 100.0% 43.6%
3oisB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 78.0 5.75e-01 100.0% 56.9%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 70.0 4.77e-01 88.2% 48.4%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 79.0 5.79e-01 100.0% 55.9%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 78.0 5.57e-01 100.0% 51.4%
2b2hA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.57 45.0 3.12e-01 84.5% 88.7%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 2.98e-01 78.2% 38.5%
5m7oA03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 36.0 3.93e-01 88.2% 90.8%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 39.0 3.12e-01 83.6% 65.5%
2vqxA01 3.10.170.10 Alpha Beta › Roll › Elastase; domain 1 › 0.50 39.0 3.53e-01 84.5% 72.9%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3676121 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.93 79.0 6.09e-01 88.2% 45.1%
3401763 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.92 88.0 6.56e-01 99.1% 57.6%
3229331 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.92 78.0 5.82e-01 88.2% 41.0%
3260560 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.92 78.0 5.66e-01 88.2% 41.9%
4024199 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.91 88.0 6.01e-01 100.0% 44.8%
3481577 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.91 83.0 6.20e-01 94.5% 55.4%
3884055 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.91 87.0 6.44e-01 100.0% 53.6%
3509928 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.91 87.0 5.66e-01 100.0% 32.6%
2076995 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.91 77.0 5.82e-01 88.2% 44.2%
None 0.90 87.0 5.84e-01 100.0% 41.9%
4783690 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.90 69.0 7.09e-01 79.1% 84.0%
4024702 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.90 84.0 6.17e-01 97.3% 56.1%
4770613 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.90 76.0 6.55e-01 88.2% 61.5%
3679431 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.90 86.0 6.02e-01 100.0% 45.3%
3617140 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.90 85.0 5.94e-01 100.0% 46.1%
3661135 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.90 86.0 5.90e-01 100.0% 41.5%
None 0.90 85.0 5.96e-01 100.0% 43.9%
3791026 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.90 85.0 5.88e-01 100.0% 43.1%
4030613 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 76.0 5.50e-01 88.2% 40.4%
3745990 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.89 82.0 6.16e-01 96.4% 54.2%
4053732 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 84.0 5.87e-01 100.0% 42.7%
4505160 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 82.0 5.87e-01 96.4% 54.1%
3417523 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 85.0 6.16e-01 100.0% 55.8%
3996190 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 82.0 7.15e-01 95.5% 84.3%
3264598 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 85.0 6.68e-01 100.0% 59.3%
3776905 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 84.0 6.17e-01 100.0% 52.7%
5056229 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 75.0 5.60e-01 88.2% 40.3%
3252600 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 75.0 5.88e-01 88.2% 47.6%
4024611 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.66e-01 100.0% 43.5%
3938586 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.88 84.0 6.15e-01 100.0% 56.2%
3567565 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.88 84.0 5.97e-01 100.0% 46.6%
3705335 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.88 83.0 6.10e-01 99.1% 56.2%
3865831 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.77e-01 100.0% 42.2%
3470973 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.88 82.0 6.14e-01 98.2% 57.0%
4268173 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.60e-01 100.0% 39.2%
3807595 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.70e-01 100.0% 40.9%
3669025 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 79.0 5.67e-01 93.6% 56.9%
4021473 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 74.0 5.50e-01 88.2% 44.0%
3248099 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.74e-01 100.0% 44.8%
4391291 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.88 82.0 6.14e-01 98.2% 54.2%
4127832 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.88 84.0 5.86e-01 100.0% 44.0%
3299435 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 83.0 5.79e-01 100.0% 44.2%
5033092 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 83.0 5.94e-01 100.0% 48.6%
3273778 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 83.0 5.70e-01 100.0% 45.4%
3668220 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 83.0 5.84e-01 100.0% 46.3%
3317119 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 80.0 5.96e-01 97.3% 53.2%
3234755 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.87 83.0 6.25e-01 100.0% 57.5%
3443485 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 82.0 5.55e-01 100.0% 43.6%
3391656 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 81.0 5.69e-01 100.0% 45.2%
3488949 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 81.0 6.14e-01 99.1% 55.7%
None 0.86 82.0 5.62e-01 100.0% 42.2%
4627786 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 82.0 5.82e-01 100.0% 43.8%
3426348 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 80.0 6.78e-01 98.2% 81.8%
3629255 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 81.0 5.71e-01 100.0% 44.6%
3940207 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 82.0 6.09e-01 100.0% 56.1%
3392327 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.86 81.0 6.03e-01 100.0% 56.0%
4448672 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.86 81.0 5.68e-01 100.0% 46.1%
None 0.85 80.0 5.51e-01 100.0% 45.0%
3699969 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 80.0 5.74e-01 98.2% 52.4%
3798944 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 81.0 5.97e-01 100.0% 55.6%
3795430 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 80.0 6.02e-01 100.0% 56.4%
4059449 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.85 79.0 5.76e-01 97.3% 59.2%
4978305 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.85 80.0 5.68e-01 100.0% 53.6%
4429823 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.85 80.0 5.57e-01 100.0% 42.4%
4960361 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 80.0 5.75e-01 100.0% 53.6%
4047160 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 79.0 5.97e-01 99.1% 55.8%
3261680 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 80.0 5.69e-01 100.0% 49.8%
3574164 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 71.0 5.94e-01 88.2% 58.3%
None 0.84 80.0 5.49e-01 100.0% 43.0%
4027374 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 71.0 5.03e-01 88.2% 41.4%
None 0.84 80.0 5.76e-01 100.0% 49.5%
3906939 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 80.0 5.59e-01 100.0% 45.9%
3226100 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.84 76.0 5.56e-01 96.4% 58.1%
3486878 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.84 79.0 5.52e-01 100.0% 46.8%
1165734 219.1.1.17 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.84 70.0 5.09e-01 88.2% 62.0%
3497089 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 79.0 5.55e-01 100.0% 48.2%
3674913 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.83 73.0 5.94e-01 97.3% 54.1%
3514380 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.83 79.0 5.54e-01 100.0% 47.5%
4026925 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.83 77.0 5.38e-01 98.2% 55.2%
3564430 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 77.0 5.39e-01 100.0% 50.9%
4029993 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 78.0 5.08e-01 100.0% 39.5%
4125761 219.1.1.17 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.82 69.0 5.01e-01 88.2% 74.2%
3834140 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 69.0 5.64e-01 88.2% 54.3%
3514367 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 77.0 5.56e-01 99.1% 55.6%
3940173 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 76.0 5.78e-01 98.2% 55.1%
1291949 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.81 75.0 5.40e-01 99.1% 48.3%
4663619 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 77.0 5.27e-01 100.0% 42.5%
4024826 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 76.0 5.04e-01 100.0% 49.3%
4000671 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.80 76.0 5.54e-01 100.0% 90.0%
3836765 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.76 71.0 5.38e-01 98.2% 54.3%
3813985 219.1.1.124 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 0.76 61.0 4.76e-01 100.0% 41.3%
3806027 219.1.1.124 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 0.72 61.0 5.30e-01 100.0% 61.9%
3575739 3998.1.1.0 alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 0.72 51.0 4.16e-01 72.7% 59.5%
D3 medium residues 110-133_231-333
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 107.0 2.20e-30 88.2% 48.2%
PF03051.22 Peptidase_C1_2 24.9 1.20e-05 48.0% 9.4%