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cell_division_cycle_123_protein

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

cell_division_cycle_123_protein__YP_007354044__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354044 ↗
Protein ID:
cell_division_cycle_123_protein
Kingdom:
euk

Quality

75.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-30_165-281
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00276__D68-84_169-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07065.20 best D123 44.0 2.40e-11 82.9% 30.7%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.75 45.0 5.55e-01 74.0% 92.6%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.74 46.0 4.50e-01 74.7% 57.7%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.73 42.0 5.20e-01 74.0% 89.4%
3tiiB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.70 52.0 4.86e-01 77.4% 80.8%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.67 48.0 4.89e-01 73.3% 81.2%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.67 49.0 4.20e-01 74.7% 54.4%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 48.0 4.78e-01 73.3% 77.2%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 48.0 4.85e-01 74.0% 83.3%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 46.0 5.24e-01 74.7% 92.9%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 51.0 5.18e-01 80.1% 98.6%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 51.0 4.53e-01 80.1% 93.6%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 46.0 5.18e-01 74.7% 92.8%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 51.0 4.01e-01 80.1% 68.3%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 51.0 4.55e-01 80.1% 92.9%
1gsoA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 50.0 5.12e-01 79.5% 100.0%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 47.0 4.64e-01 74.0% 78.2%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 50.0 4.15e-01 80.1% 77.3%
3orqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 50.0 4.37e-01 80.1% 83.9%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 46.0 4.46e-01 73.3% 67.3%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 48.0 4.41e-01 80.1% 93.5%
2zaiB03 2.60.40.3020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 30.0 3.50e-01 70.5% 78.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636109 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.79 68.0 5.21e-01 89.0% 96.0%
3987360 206.1.3.84 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › R2K_2 0.78 45.0 4.30e-01 73.3% 49.4%
3830939 206.1.3.18 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.76 60.0 4.66e-01 81.5% 45.1%
3542430 206.1.3.18 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.75 60.0 4.62e-01 82.9% 46.5%
2777647 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.74 46.0 4.27e-01 74.7% 50.3%
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.72 51.0 4.20e-01 73.3% 51.0%
1886885 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.71 45.0 4.03e-01 74.0% 46.4%
5061777 206.1.3.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.70 52.0 4.39e-01 76.7% 62.1%
3979044 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.70 51.0 4.33e-01 74.7% 49.6%
980877 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.69 44.0 4.11e-01 74.7% 52.2%
None — 0.68 53.0 4.28e-01 80.1% 61.5%
None — 0.68 49.0 4.10e-01 74.7% 62.0%
5011065 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.68 47.0 4.13e-01 74.7% 49.8%
4880373 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.67 45.0 4.20e-01 74.7% 55.1%
5021393 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.67 50.0 4.05e-01 77.4% 53.0%
4192663 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.67 46.0 3.96e-01 74.7% 45.3%
5041479 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.67 45.0 4.07e-01 74.0% 51.6%
None — 0.67 50.0 4.33e-01 77.4% 58.3%
4932969 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 48.0 3.99e-01 73.3% 55.0%
4927986 206.1.3.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.66 52.0 3.95e-01 82.9% 89.2%
4947584 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 47.0 4.05e-01 73.3% 57.0%
None — 0.66 50.0 4.26e-01 77.4% 56.1%
None — 0.66 48.0 4.31e-01 74.0% 59.0%
4062153 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.66 53.0 4.15e-01 83.6% 92.5%
5011365 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.66 46.0 4.09e-01 75.3% 50.7%
3997451 206.1.3.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.66 43.0 4.37e-01 73.3% 66.2%
4677601 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 47.0 4.11e-01 73.3% 53.0%
None — 0.66 47.0 3.97e-01 73.3% 48.1%
4414843 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 48.0 4.18e-01 74.0% 53.8%
4996083 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 48.0 4.05e-01 74.0% 55.7%
3387349 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.66 51.0 4.36e-01 79.5% 59.1%
4891277 206.1.3.7 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp 0.66 51.0 4.52e-01 80.1% 63.1%
4948293 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.65 51.0 4.09e-01 82.2% 94.7%
None — 0.65 47.0 4.11e-01 74.7% 55.5%
5036063 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.65 46.0 4.27e-01 74.7% 58.3%
3607229 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.65 47.0 4.04e-01 74.7% 57.0%
5046855 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.65 45.0 3.97e-01 74.7% 49.8%
4937607 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.65 47.0 4.18e-01 74.0% 58.0%
4505183 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.65 47.0 4.09e-01 74.0% 53.0%
5043076 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.65 45.0 4.06e-01 74.7% 52.0%
None — 0.65 47.0 3.85e-01 74.7% 45.4%
4588934 206.1.3.25 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.64 50.0 3.93e-01 80.1% 65.2%
3282995 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.64 47.0 4.23e-01 76.0% 56.0%
5058364 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.64 47.0 4.06e-01 74.7% 57.7%
4233261 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.64 51.0 4.05e-01 83.6% 89.3%
5020794 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.63 47.0 3.89e-01 76.7% 93.3%
3971603 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.63 51.0 4.02e-01 84.9% 96.6%
4412811 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.63 50.0 4.00e-01 82.9% 94.6%
3403038 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.63 48.0 4.15e-01 79.5% 60.9%
3734729 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.62 48.0 4.02e-01 80.1% 62.0%
4060053 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.61 47.0 4.00e-01 80.1% 61.3%
4239442 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.61 48.0 3.99e-01 82.9% 84.7%
4986756 206.1.3.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.61 48.0 3.87e-01 82.9% 94.9%
2756576 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.61 44.0 3.84e-01 74.7% 50.7%
5033884 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.60 48.0 4.10e-01 82.9% 64.0%
None — 0.58 47.0 4.03e-01 83.6% 62.7%
2797621 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.58 46.0 4.27e-01 83.6% 69.2%
5050960 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.57 46.0 4.02e-01 83.6% 62.4%
3597751 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.57 44.0 3.58e-01 81.5% 65.9%
4619775 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.55 45.0 4.04e-01 84.2% 71.6%
3510399 206.1.3.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.55 44.0 3.83e-01 83.6% 61.4%
4411405 206.1.3.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.55 43.0 4.39e-01 83.6% 91.0%
3693414 206.1.3.8 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.54 46.0 3.73e-01 89.7% 77.4%
None — 0.54 48.0 4.12e-01 93.8% 94.1%
5075826 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.54 42.0 3.85e-01 82.2% 99.5%
5051729 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.88e-01 79.5% 83.1%
4997750 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 4.14e-01 79.5% 94.8%
D2 high residues 57-160
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zctA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 36.0 4.26e-01 100.0% 97.0%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 42.0 4.28e-01 97.1% 78.8%
2lpnA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 44.0 4.40e-01 96.2% 81.0%
1mswD04 1.10.287.280 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 28.0 3.14e-01 92.3% 65.4%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.52 31.0 3.50e-01 99.0% 80.0%
5yxgB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 45.0 3.86e-01 100.0% 66.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636109 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.83 78.0 5.45e-01 100.0% 36.7%
4030088 206.1.3.18 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.73 68.0 4.93e-01 100.0% 39.0%