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cg30-2
Euk-VirSucra_jujuba_nucleopolyhedrovirus
cg30-2__YP_009186699__Sucra_jujuba_nucleopolyhedrovirus__1563660
Identity
- Accession:
- YP_009186699 ↗
- Protein ID:
- cg30-2
- Kingdom:
- euk
Quality
61.8
mean pLDDT
Taxonomy
TaxID: 1563660
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 82-198
Domain cluster:
rep: CG30__YP_010086494__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D3-115
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.72 | 30.0 | 3.41e-01 | 80.3% | 49.5% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.67 | 34.0 | 3.43e-01 | 76.1% | 47.5% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.63 | 28.0 | 3.57e-01 | 82.1% | 71.2% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 28.0 | 3.64e-01 | 76.9% | 73.1% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 25.0 | 3.39e-01 | 76.9% | 72.1% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 24.0 | 3.54e-01 | 82.1% | 88.9% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 31.0 | 3.92e-01 | 81.2% | 91.9% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 24.0 | 3.01e-01 | 70.1% | 62.1% |
| 2gpiA00 | 3.30.160.140 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like | 0.54 | 34.0 | 3.80e-01 | 80.3% | 81.3% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 29.0 | 3.00e-01 | 82.1% | 54.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1693005 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 30.0 | 3.42e-01 | 82.1% | 51.7% |
| 3244935 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.68 | 41.0 | 4.60e-01 | 87.2% | 75.8% |
| 3985617 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.65 | 32.0 | 4.04e-01 | 74.4% | 78.6% |
| 3387114 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.64 | 30.0 | 3.32e-01 | 78.6% | 53.7% |
| 4514268 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.64 | 30.0 | 3.40e-01 | 76.9% | 57.3% |
| 3965386 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.63 | 29.0 | 2.93e-01 | 76.9% | 42.4% |
| 415 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.63 | 28.0 | 3.64e-01 | 76.9% | 73.1% |
| 5061930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 31.0 | 3.37e-01 | 82.9% | 55.8% |
| 3967665 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.62 | 29.0 | 3.61e-01 | 84.6% | 71.4% |
| 5020098 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.61 | 28.0 | 3.55e-01 | 76.9% | 71.4% |
| 3280978 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.59 | 28.0 | 3.43e-01 | 76.9% | 71.4% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 30.0 | 3.55e-01 | 82.9% | 77.3% |
| 3285858 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.54 | 39.0 | 3.09e-01 | 95.7% | 35.8% |
| 3392130 | 4.1.1.223 ↗ | beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st | 0.54 | 27.0 | 3.57e-01 | 75.2% | 87.7% |
| 5018080 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 31.0 | 3.41e-01 | 88.0% | 74.4% |
| 5011572 | 2.1.1.32 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 | 0.52 | 33.0 | 3.44e-01 | 82.1% | 68.2% |
| 3934686 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 28.0 | 3.08e-01 | 90.6% | 63.2% |
| 3265309 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.51 | 39.0 | 3.73e-01 | 99.1% | 67.4% |
| 5031060 | 2.1.1.32 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 | 0.51 | 34.0 | 3.43e-01 | 82.1% | 67.8% |