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chemokine_vCXCL13

Euk-Vir

Aotine_betaherpesvirus_1

chemokine_vCXCL13__YP_004940143__Aotine_betaherpesvirus_1__50290

Identity

Accession:
YP_004940143 ↗
Protein ID:
chemokine_vCXCL13
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Aotine_betaherpesvirus_1

TaxID: 50290

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-123
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00048.26 best IL8 30.3 5.40e-07 60.2% 78.3%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 51.0 6.02e-01 82.8% 87.9%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 54.0 6.35e-01 82.8% 95.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.81 49.0 5.71e-01 82.8% 86.4%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 46.0 5.48e-01 96.8% 85.9%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 48.0 5.69e-01 87.1% 93.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 50.0 5.72e-01 87.1% 91.0%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 47.0 5.39e-01 81.7% 85.1%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 48.0 5.38e-01 86.0% 82.2%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 48.0 5.29e-01 84.9% 80.8%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 46.0 5.18e-01 87.1% 81.7%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 48.0 5.35e-01 92.5% 86.5%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 47.0 5.07e-01 87.1% 84.4%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 44.0 4.92e-01 92.5% 87.1%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 39.0 4.22e-01 76.3% 69.6%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 37.0 4.55e-01 86.0% 92.9%
1lv9A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 40.0 4.65e-01 91.4% 92.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.62 37.0 4.31e-01 78.5% 87.3%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.60 45.0 4.49e-01 96.8% 75.8%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 30.0 3.92e-01 73.1% 89.8%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.48e-01 90.3% 92.8%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 36.0 2.48e-01 82.8% 19.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.20e-01 100.0% 93.4%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 43.0 4.10e-01 84.9% 84.7%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.79e-01 100.0% 78.4%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.39e-01 90.3% 84.3%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 38.0 3.69e-01 73.1% 71.2%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 36.0 3.76e-01 83.9% 74.4%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 32.0 3.12e-01 83.9% 51.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.42e-01 96.8% 94.4%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 4.04e-01 88.2% 76.5%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.86e-01 91.4% 91.2%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 35.0 3.90e-01 86.0% 90.1%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 3.06e-01 95.7% 89.8%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.64e-01 83.9% 89.8%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.82e-01 93.5% 87.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1032344 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.89 55.0 5.94e-01 79.6% 72.8%
3859059 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.81 54.0 5.50e-01 82.8% 70.0%
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.81 49.0 5.63e-01 81.7% 83.6%
3761120 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.80 47.0 5.54e-01 83.9% 84.6%
3915693 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.80 49.0 5.80e-01 92.5% 89.2%
3541613 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 48.0 5.56e-01 87.1% 83.8%
3842884 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 49.0 5.58e-01 88.2% 85.3%
4424678 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 51.0 5.92e-01 81.7% 93.8%
4813310 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.78 48.0 5.53e-01 82.8% 86.6%
3556735 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 48.0 5.38e-01 88.2% 80.8%
3899072 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 49.0 5.54e-01 92.5% 85.7%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 46.0 5.60e-01 92.5% 93.4%
2388239 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 48.0 5.29e-01 84.9% 80.8%
3764537 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 50.0 5.31e-01 82.8% 77.5%
3556658 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 53.0 5.87e-01 87.1% 90.7%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 48.0 5.44e-01 82.8% 85.7%
3878850 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.75 49.0 5.42e-01 82.8% 82.7%
3894564 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.75 49.0 5.21e-01 82.8% 75.9%
3898211 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.74 49.0 5.41e-01 82.8% 85.1%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.74 47.0 5.37e-01 82.8% 88.2%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.74 50.0 5.48e-01 82.8% 86.7%
2055300 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 49.0 5.01e-01 72.0% 71.9%
3918073 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 46.0 5.14e-01 82.8% 90.0%
3573692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 4.46e-01 82.8% 57.1%
1558587 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 47.0 5.07e-01 87.1% 84.4%
3964241 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.68 48.0 5.38e-01 89.2% 97.1%
3991073 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 40.0 4.98e-01 79.6% 100.0%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 41.0 4.95e-01 79.6% 98.3%
3709493 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 36.0 3.27e-01 84.9% 40.0%
4504508 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 36.0 3.77e-01 86.0% 61.2%
4399169 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 35.0 4.26e-01 86.0% 86.7%
3608651 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 54.0 3.83e-01 98.9% 40.7%
3869511 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 50.0 5.02e-01 88.2% 92.6%
4598956 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 36.0 3.51e-01 87.1% 51.4%
3279562 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.60 42.0 4.56e-01 83.9% 88.0%
3715091 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.59 30.0 3.49e-01 80.6% 67.7%
3664617 2.1.1.223 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.58 38.0 3.96e-01 83.9% 71.8%
4461475 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 34.0 3.83e-01 86.0% 75.7%
3716301 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.52e-01 93.5% 98.3%
3311131 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 44.0 3.54e-01 83.9% 53.0%
4506377 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 33.0 2.80e-01 82.8% 34.8%
1511313 214.1.1.3 ↗ a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.56 35.0 3.64e-01 77.4% 65.6%
3631346 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.89e-01 89.2% 86.3%
3235806 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.55 45.0 3.90e-01 90.3% 90.7%
3225772 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 39.0 3.64e-01 73.1% 71.3%
4029851 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 44.0 4.36e-01 87.1% 84.0%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 4.27e-01 80.6% 94.3%
None — 0.54 47.0 3.69e-01 100.0% 78.1%
4578663 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 35.0 4.00e-01 90.3% 88.6%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 45.0 4.16e-01 93.5% 87.1%
3793604 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.75e-01 88.2% 90.3%
3478713 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 41.0 3.81e-01 82.8% 72.5%
3227955 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.53 42.0 3.03e-01 83.9% 78.8%
3750217 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.53 43.0 3.57e-01 89.2% 77.6%
4093535 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 41.0 3.68e-01 82.8% 66.2%
4322616 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 42.0 3.17e-01 86.0% 44.8%
4169409 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.53 42.0 3.98e-01 87.1% 87.7%
3439990 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 42.0 4.26e-01 83.9% 91.1%
4276145 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.53 41.0 3.94e-01 84.9% 86.2%
3611221 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 41.0 4.03e-01 87.1% 84.8%
3713382 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 41.0 3.99e-01 87.1% 85.7%
3927366 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.52 40.0 3.48e-01 83.9% 76.0%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.52 41.0 3.99e-01 86.0% 90.5%
3852891 3164.1.1.0 ↗ few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein 0.52 44.0 3.39e-01 97.8% 43.5%
3272286 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.52 39.0 3.72e-01 80.6% 81.8%
3364309 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.52 40.0 3.57e-01 82.8% 58.5%
4484723 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.51 41.0 4.01e-01 87.1% 90.4%
3733607 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 45.0 2.85e-01 98.9% 78.4%
3711682 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 44.0 2.97e-01 94.6% 31.8%
4023515 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.58e-01 83.9% 92.7%