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chemokine_vCXCL2
Euk-VirCercopithecine_betaherpesvirus_5
chemokine_vCXCL2__YP_004936089__Cercopithecine_betaherpesvirus_5__50292
Identity
- Accession:
- YP_004936089 ↗
- Protein ID:
- chemokine_vCXCL2
- Kingdom:
- euk
Quality
83.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Cytomegalovirus›
Cercopithecine_betaherpesvirus_5
TaxID: 50292
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-79
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 46.0 | 4.69e-01 | 73.3% | 71.2% |
| 3sokB00 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.63 | 56.0 | 4.51e-01 | 98.7% | 88.0% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 43.0 | 4.27e-01 | 90.7% | 89.7% |
| 4huzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 36.0 | 2.91e-01 | 74.7% | 60.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4205423 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.78 | 53.0 | 5.39e-01 | 73.3% | 70.7% |
| 3859059 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.76 | 52.0 | 4.89e-01 | 73.3% | 58.9% |
| 3179214 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.68 | 41.0 | 2.54e-01 | 78.7% | 11.1% |
| 3733922 | 247.1.1.42 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, Lactamase_B_2, Lactamase_B_4 | 0.67 | 36.0 | 2.03e-01 | 94.7% | 5.0% |
| 3282412 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.52 | 35.0 | 3.02e-01 | 70.7% | 55.3% |
| 3638019 | 5.1.5.88 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N | 0.52 | 44.0 | 2.69e-01 | 94.7% | 97.2% |
D2
medium
residues 80-141
Domain cluster:
rep: rh158__YP_068247__Macacine_betaherpesvirus_3__47929__D103-153