cleavage_packaging_protein

Euk-Vir

Cricetid_gammaherpesvirus_2

cleavage_packaging_protein__YP_004207870__Cricetid_gammaherpesvirus_2__1605972

Identity

64.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Cricetid_gammaherpesvirus_2

TaxID: 1605972

View cluster (10 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-132

PDB

D2 medium residues 137-212

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	48.9	1.00e-12	100.0%	28.4%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qsgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.63	43.0	3.78e-01	71.1%	96.5%
1vw4L02	1.10.246.170	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.55	42.0	4.06e-01	81.6%	74.1%
8bykA01	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.55	46.0	2.95e-01	98.7%	93.3%
3lv8A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	48.0	3.58e-01	100.0%	50.0%
3ld9A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	47.0	3.62e-01	98.7%	46.5%
1ya0A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	47.0	3.50e-01	98.7%	51.5%
1yn9B00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.54	46.0	3.65e-01	98.7%	89.3%
3cx5A02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.53	45.0	3.33e-01	100.0%	79.8%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.51	37.0	3.80e-01	80.3%	81.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3275843	189.1.1.1 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RasGAP	0.58	50.0	3.24e-01	100.0%	44.9%
5010958	4033.1.1.0 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like	0.56	48.0	4.72e-01	98.7%	92.9%
3577230	604.1.1.5 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3	0.56	42.0	3.85e-01	81.6%	82.9%
3243484	532.2.1.0 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains	0.55	46.0	4.38e-01	94.7%	93.3%
3581263	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	41.0	3.80e-01	84.2%	85.0%
4460538	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.51	41.0	2.78e-01	93.4%	23.6%

D3 medium residues 213-314

PDB

Domain cluster: rep: ORF24__NP_733877__Callitrichine_gammaherpesvirus_3__106331__D132-231

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	150.7	9.60e-44	93.1%	34.3%