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coat-like_protein

Euk-Vir

Arracacha_virus_1

coat-like_protein__YP_009551998__Arracacha_virus_1__2201042

Identity

Accession:: YP_009551998 ↗
Protein ID:: coat-like_protein
Kingdom:: euk

Quality

70.1 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Closterovirus› Arracacha_virus_1

TaxID: 2201042

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-167

PDB

Domain cluster: rep: CP__YP_009162627__Tobacco_virus_1__1692045__D32-141

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	67.2	1.70e-18	100.0%	57.1%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8ctsB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.66	41.0	4.62e-01	84.3%	81.6%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.63	41.0	4.72e-01	87.0%	91.5%
4ixjA01	3.30.1300.80	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 ›	0.60	30.0	3.66e-01	86.1%	71.4%
3rrkA03	3.30.70.2750	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	32.0	3.86e-01	80.0%	83.8%
3nkhA00	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.57	51.0	4.12e-01	99.1%	86.0%
4a8eA02	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.56	50.0	4.34e-01	98.3%	84.4%
4bbyA05	3.30.300.330	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.55	41.0	4.22e-01	80.0%	81.5%
1vw5B00	3.30.429.10	Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor	0.55	42.0	4.30e-01	82.6%	81.4%
3pqaB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.54	49.0	3.70e-01	99.1%	76.8%
2k3iA01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	35.0	3.94e-01	81.7%	88.2%
2x48A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	26.0	3.65e-01	77.4%	100.0%
4lhpF00	3.30.429.10	Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor	0.52	40.0	3.88e-01	81.7%	76.2%
1r89A03	3.30.70.590	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain	0.52	44.0	4.18e-01	93.9%	78.4%
1rzmA01	3.30.70.1140	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1	0.51	33.0	3.87e-01	88.7%	95.0%
2hg2A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.51	46.0	3.44e-01	100.0%	72.7%
4ctaA02	3.30.70.2860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	30.0	3.56e-01	80.0%	89.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4524416	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.62	41.0	4.33e-01	87.0%	74.3%
5050732	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.62	32.0	3.23e-01	71.3%	47.5%
3408417	2006.1.1.44 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like	0.61	45.0	3.57e-01	78.3%	51.2%
5023625	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.61	39.0	4.13e-01	86.1%	73.0%
3653902	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.61	48.0	3.96e-01	86.1%	82.8%
4665476	5081.1.1.1 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid	0.57	40.0	3.36e-01	74.8%	54.4%
3669930	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.53	31.0	3.47e-01	80.0%	75.3%
4982261	2498.1.1.10 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48	0.52	40.0	2.94e-01	81.7%	59.1%
3786162	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.51	28.0	3.04e-01	71.3%	62.1%
5047552	2008.1.1.201 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_CfrBI	0.51	36.0	2.70e-01	72.2%	94.7%
5028212	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.51	37.0	3.38e-01	74.8%	95.3%
5078448	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.51	29.0	2.96e-01	71.3%	57.3%
3828336	192.2.1.1 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2	0.50	26.0	2.70e-01	71.3%	49.1%

D2 medium residues 168-219

PDB

Domain cluster: rep: CPm__YP_009553645__Blackcurrant-associated_closterovirus_1__2338394__D141-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	58.2	9.60e-16	100.0%	26.5%