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coat_protein
Euk-VirCactus_virus_X
coat_protein__NP_148784__Cactus_virus_X__112227
Identity
- Accession:
- NP_148784 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
77.0
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Potexvirus›
Cactus_virus_X
TaxID: 112227
Cluster
View cluster (87 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-140
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 59.2 | 6.00e-16 | 99.0% | 65.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jekA00 | 1.25.40.380 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein of unknown function DUF1810 | 0.66 | 39.0 | 3.40e-01 | 80.2% | 39.3% |
| 2v6eA03 | 1.10.443.30 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase | 0.54 | 41.0 | 3.20e-01 | 83.3% | 63.6% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.53 | 29.0 | 2.92e-01 | 90.6% | 49.5% |
| 4pl3B03 | 1.20.1440.180 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › KEN domain | 0.52 | 42.0 | 3.87e-01 | 99.0% | 67.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2775588 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.90 | 85.0 | 6.51e-01 | 100.0% | 49.2% |
| 1722663 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.88 | 83.0 | 6.20e-01 | 100.0% | 45.6% |
| 1818174 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.82 | 76.0 | 5.85e-01 | 100.0% | 47.1% |
| 2123187 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.79 | 72.0 | 5.77e-01 | 100.0% | 55.9% |
| 3179970 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 41.0 | 4.36e-01 | 93.8% | 100.0% |
| 3924089 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.50 | 36.0 | 3.20e-01 | 76.0% | 85.5% |
D2
medium
residues 141-203
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 44.2 | 2.70e-11 | 57.1% | 26.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.73 | 57.0 | 4.33e-01 | 82.5% | 58.6% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.70 | 44.0 | 4.53e-01 | 82.5% | 65.6% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.62 | 42.0 | 3.37e-01 | 71.4% | 39.0% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 49.0 | 3.87e-01 | 85.7% | 90.4% |
| 3rlbA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.60 | 46.0 | 3.33e-01 | 82.5% | 52.3% |
| 2fbqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 39.0 | 2.68e-01 | 71.4% | 43.2% |
| 6jgwA01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 44.0 | 3.52e-01 | 84.1% | 44.6% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.56 | 46.0 | 3.18e-01 | 92.1% | 55.4% |
| 4uopA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 45.0 | 4.03e-01 | 93.7% | 88.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2775588 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.87 | 81.0 | 5.51e-01 | 100.0% | 36.2% |
| 1722663 | 3143.1.1.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Flexi_CP | 0.84 | 74.0 | 5.02e-01 | 96.8% | 31.3% |
| 4990932 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.65 | 50.0 | 3.49e-01 | 82.5% | 91.8% |
| 3625044 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.65 | 50.0 | 4.18e-01 | 82.5% | 61.0% |
| 1088878 | 633.30.1.1 ↗ | alpha bundles › Bromodomain-like › hypothetical protein ABAYE3784 › hypothetical protein ABAYE3784 › DUF4844 | 0.62 | 42.0 | 3.37e-01 | 71.4% | 39.0% |
| 3468108 | 109.4.1.1373 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C, Vps54_N | 0.60 | 53.0 | 3.06e-01 | 100.0% | 37.4% |
| 3581078 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.60 | 44.0 | 3.10e-01 | 77.8% | 24.5% |
| 3736195 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.59 | 45.0 | 2.73e-01 | 84.1% | 12.4% |
| 3959763 | 150.7.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE | 0.59 | 45.0 | 3.96e-01 | 81.0% | 97.8% |
| 3993980 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.58 | 45.0 | 3.11e-01 | 81.0% | 61.0% |
| 2105214 | 1069.1.1.1 ↗ | alpha arrays › CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain › CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain › CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain › Cpf1_PI-like | 0.56 | 41.0 | 3.49e-01 | 81.0% | 47.6% |
| 4113840 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.55 | 46.0 | 3.34e-01 | 98.4% | 36.9% |