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coat_protein
Euk-VirGarlic_virus_E
coat_protein__NP_659016__Garlic_virus_E__150285
Identity
- Accession:
- NP_659016 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Allexivirus›
Garlic_virus_E
TaxID: 150285
Cluster
View cluster (87 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 74-125
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 29.1 | 1.20e-06 | 100.0% | 36.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xgqA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.61 | 46.0 | 3.45e-01 | 82.7% | 98.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1678276 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.61 | 46.0 | 3.45e-01 | 82.7% | 98.5% |
| 3173242 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 42.0 | 3.32e-01 | 92.3% | 38.3% |
D2
medium
residues 126-237
Domain cluster:
rep: capsid_protein__YP_009552766__Turtle_grass_virus_X__2292642__D115-201
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00286.26 best | Flexi_CP | 110.2 | 1.10e-31 | 72.3% | 57.2% |