coat_protein

Euk-Vir

Barley_mild_mosaic_virus

coat_protein__NP_734300__Barley_mild_mosaic_virus__12466

Identity

71.6 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Bymovirus› Barley_mild_mosaic_virus

TaxID: 12466

View cluster (85 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-215

PDB

Domain cluster: rep: coat_protein__YP_002956096__Triticum_mosaic_virus__431317__D124-248

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00767.23 best	Poty_coat	35.4	1.30e-08	99.2%	57.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rekA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	45.0	4.14e-01	89.5%	87.2%
3pg1A02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.54	38.0	3.30e-01	72.2%	95.8%
3wiwA00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.50	40.0	2.94e-01	84.2%	59.0%
3hisA02	4.10.470.10	Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2	0.50	30.0	3.69e-01	100.0%	97.5%
4fb2A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.50	40.0	2.87e-01	85.0%	68.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3538408	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.54	21.0	2.49e-01	93.2%	47.4%
5069467	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.54	29.0	2.88e-01	70.7%	46.2%
3583139	109.4.1.1870 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_MROH2B_C	0.52	44.0	2.85e-01	91.7%	25.5%
3795749	109.4.1.1945 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_1st, HEAT_MROH2B_C	0.51	43.0	2.47e-01	94.7%	9.2%
3321176	5051.1.1.6 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans	0.51	39.0	2.74e-01	81.2%	91.6%
4273032	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.51	44.0	3.13e-01	95.5%	89.0%
3219345	5001.1.1.66 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg	0.50	36.0	2.85e-01	75.2%	68.6%