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coat_protein
Euk-VirNootka_lupine_vein_clearing_virus
coat_protein__YP_001039887__Nootka_lupine_vein_clearing_virus__283876
Identity
- Accession:
- YP_001039887 ↗
- Protein ID:
- coat_protein
- Kingdom:
- euk
Quality
81.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Tolucaviricetes›
Tolivirales›
Tombusviridae›
Alphacarmovirus›
Nootka_lupine_vein_clearing_virus
TaxID: 283876
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 79-237
Domain cluster:
rep: structural_polyprotein__YP_009333175__Bastrovirus-like_virus_VietNam_Bat_17819_21__1906170__D141-305
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00729.25 best | Viral_coat | 112.5 | 3.60e-32 | 100.0% | 84.5% |
D2
high
residues 246-344
D3
medium
residues 1-63
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wtbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.56 | 42.0 | 2.76e-01 | 82.5% | 71.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3711337 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.55 | 38.0 | 3.80e-01 | 74.6% | 100.0% |
| 3514242 | 101.1.2.461 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 | 0.53 | 38.0 | 3.71e-01 | 79.4% | 91.4% |