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coat_protein

Euk-Vir

Lamium_leaf_distortion_virus

coat_protein__YP_001931960__Lamium_leaf_distortion_virus__515320

Identity

Accession:
YP_001931960 ↗
Protein ID:
coat_protein
Kingdom:
euk

Quality

65.3 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Caulimovirus› Lamium_leaf_distortion_virus

TaxID: 515320

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 173-252
PDB
Domain cluster: rep: hypothetical_protein__NP_043932__Strawberry_vein_banding_virus__47903__D115-200
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.69 40.0 4.37e-01 96.2% 68.7%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.66 41.0 4.22e-01 93.8% 65.8%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 44.0 4.07e-01 96.2% 55.0%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 42.0 4.04e-01 96.2% 60.0%
2b9rA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 45.0 3.83e-01 80.0% 63.6%
1vinA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 45.0 3.83e-01 80.0% 65.5%
2vy3A01 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.61 50.0 3.68e-01 93.8% 36.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 44.0 4.08e-01 96.2% 61.6%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 45.0 3.94e-01 83.7% 70.7%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 42.0 3.62e-01 96.2% 47.2%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.74e-01 100.0% 46.5%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.57 39.0 3.57e-01 100.0% 53.2%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 45.0 3.99e-01 88.7% 68.4%
3tzlA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.55 46.0 4.26e-01 93.8% 74.0%
3hv0A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 44.0 4.03e-01 95.0% 66.1%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 43.0 4.22e-01 100.0% 79.3%
3d0wA00 1.10.760.20 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 0.53 45.0 4.47e-01 100.0% 93.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.93e-01 98.8% 78.6%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 45.0 3.84e-01 100.0% 88.0%
3qkiB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 42.0 2.81e-01 96.2% 98.7%
2jnsA01 1.20.1270.220 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 37.0 3.73e-01 77.5% 85.2%
4r30A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 42.0 3.25e-01 100.0% 41.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3825556 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.84 68.0 7.04e-01 93.8% 92.0%
3853328 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.82 68.0 7.08e-01 90.0% 94.7%
3168455 170.1.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Ty3_capsid 0.79 60.0 6.04e-01 88.7% 80.0%
3532229 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.79 67.0 6.78e-01 92.5% 91.3%
3631497 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.76 66.0 6.53e-01 93.8% 89.4%
4383404 170.2.1.28 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › PNMA 0.76 54.0 6.04e-01 85.0% 100.0%
3630744 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.76 66.0 6.50e-01 93.8% 88.2%
3573690 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.75 57.0 6.07e-01 92.5% 92.9%
3515413 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.73 54.0 5.73e-01 90.0% 90.0%
3798911 170.2.1.8 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF1759 0.73 55.0 5.58e-01 93.8% 81.2%
3639813 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.71 60.0 6.05e-01 95.0% 92.5%
4927171 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.70 43.0 4.19e-01 96.2% 55.6%
3941155 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.70 56.0 5.12e-01 88.7% 66.7%
4512923 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.68 52.0 5.17e-01 83.7% 100.0%
3801706 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.68 41.0 3.54e-01 96.2% 38.0%
3789719 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 42.0 3.97e-01 96.2% 53.7%
3389507 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.65 41.0 3.62e-01 96.2% 42.5%
3738950 604.38.1.5 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle › TMD_POM152 0.62 44.0 4.22e-01 75.0% 84.2%
4950612 108.4.1.3 ↗ alpha arrays › EF-hand › Hypothetical protein MTH865 › Hypothetical protein MTH865 › DUF2795 0.61 43.0 4.70e-01 78.8% 100.0%
4948728 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.60 47.0 4.54e-01 90.0% 100.0%
3171735 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.59 40.0 3.84e-01 93.8% 60.0%
3470163 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.59 42.0 2.97e-01 96.2% 24.6%
3311166 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.57 50.0 3.78e-01 98.8% 51.8%
4935021 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.55 42.0 4.11e-01 93.8% 74.4%
3294610 109.4.1.459 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135 0.53 44.0 3.62e-01 91.3% 100.0%
3927756 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.51 41.0 3.58e-01 93.8% 58.3%
3722987 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.51 42.0 3.17e-01 93.8% 59.0%
5012473 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 44.0 3.94e-01 96.2% 69.1%
D2 medium residues 256-364
PDB
Domain cluster: rep: coat_protein_movement_protein__YP_004347414__Sweet_potato_collusive_virus__930168__D560-659
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22909.2 best Caulimovir_coat_dom 30.0 7.80e-07 93.6% 87.6%
D3 medium residues 426-483
PDB
Domain cluster: rep: capsid_protein__YP_006907833__Horseradish_latent_virus__264076__D396-450