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coat_protein

Euk-Vir

Grapevine_virus_E

coat_protein__YP_002117778__Grapevine_virus_E__516956

Identity

Accession:: YP_002117778 ↗
Protein ID:: coat_protein
Kingdom:: euk

Quality

85.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Vitivirus› Grapevine_virus_E

TaxID: 516956

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-127

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	80.6	1.80e-22	99.2%	59.9%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hstB03	1.10.1400.10	Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region	0.53	33.0	3.32e-01	81.1%	59.7%
1chuA03	1.20.58.100	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain	0.51	31.0	3.55e-01	93.7%	84.1%
3swhA01	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.51	38.0	3.50e-01	100.0%	59.4%
4jrnA01	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.51	41.0	3.49e-01	85.0%	82.2%
1h6gA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	35.0	3.58e-01	92.9%	71.8%
2zihC00	1.10.3630.10	Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like	0.51	39.0	3.08e-01	82.7%	90.3%
7lb8B01	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.50	38.0	2.91e-01	80.3%	77.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929069	5050.1.1.31 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr	0.57	43.0	3.61e-01	78.7%	98.2%
3540826	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.56	42.0	3.50e-01	79.5%	80.9%
3882976	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.55	40.0	2.80e-01	78.0%	39.8%
3971001	3226.1.1.2 ↗	alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp	0.55	46.0	3.31e-01	93.7%	67.1%
3330202	5050.1.1.15 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like	0.53	39.0	3.34e-01	77.2%	88.8%
3731168	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	36.0	3.83e-01	96.9%	82.9%
5052059	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	41.0	3.51e-01	85.8%	97.6%
4334590	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.51	44.0	3.44e-01	98.4%	91.0%
5065276	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.51	44.0	3.39e-01	97.6%	92.9%
3524431	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	37.0	3.76e-01	92.9%	77.6%
4997475	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.50	43.0	3.47e-01	97.6%	97.1%

D2 high residues 133-195

PDB

Domain cluster: rep: capsid_protein__YP_008997792__Apricot_vein_clearing_associated_virus__1343920__D148-220

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05892.18 best	Tricho_coat	90.4	1.70e-25	100.0%	30.7%